In silico prediction of proteins related to xyloglucan fucosyltransferases in Solanaceae genomes

Autor: Arnaud Lehner, Azeddine Driouich, Jean-Claude Mollet, François Le Mauff, Flavien Dardelle, Laurence Menu-Bouaouiche, Patrice Lerouge
Přispěvatelé: Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)
Jazyk: angličtina
Rok vydání: 2015
Předmět:
Capsicum annuum
[SDV.BIO]Life Sciences [q-bio]/Biotechnology
Nicotiana tabacum
Amino Acid Motifs
Nicotiana benthamiana
Coffea
Plant Science
[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]
tomato
Genome
tobacco
Fucosyltransferases
chemistry.chemical_compound
pepper
xyloglucan
Solanum lycopersicum
[SDV.BC.IC]Life Sciences [q-bio]/Cellular Biology/Cell Behavior [q-bio.CB]
Arabidopsis thaliana
xyloglucan fucosyltransferase
Phylogeny
Solanaceae
[SDV.BDD.GAM]Life Sciences [q-bio]/Development Biology/Gametogenesis
Plant Proteins
2. Zero hunger
biology
food and beverages
[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Molecular Networks [q-bio.MN]

Xyloglucan
Biochemistry
pollen
potato
Algorithms
Genome
Plant

Short Communication
In silico
Molecular Sequence Data
coffee
Eggplant
Coffea canephora
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Genomics [q-bio.GN]

Botany
Computer Simulation
Amino Acid Sequence
Solanum melongena
[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biochemistry [q-bio.BM]

Solanum tuberosum
fungi
[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Molecular biology

biology.organism_classification
Protein Structure
Tertiary

[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy
[SDV.BV.AP]Life Sciences [q-bio]/Vegetal Biology/Plant breeding
[CHIM.POLY]Chemical Sciences/Polymers
chemistry
cell wall
Sequence Alignment
Zdroj: Plant Signaling and Behavior
Plant Signaling and Behavior, Taylor & Francis, 2015, 10 (6), pp.e1026023. ⟨10.1080/15592324.2015.1026023⟩
ISSN: 1559-2316
1559-2324
Popis: International audience; Two independent studies have shown that the cell wall of pollen tubes from tobacco and tomato species contained fucosylated xyloglucan (XyG). These findings are intriguing as many reports have shown that XyG of somatic cells of these species is not fucosylated but instead is arabinosylated. In order to produce fucosylated XyG, plants must express a functional galactoside α-2-fucosyltransferase. Here, using a bioinformatics approach, we show that several candidate genes coding for XyG fucosyltransferases are present in the genome of coffee and several Solanaceae species including tomato, tobacco, potato, eggplant and pepper. BLAST and protein alignments with the 2 well-characterized XyG fucosyltransferases from Arabidopsis thaliana and Pisum sativum revealed that at least 6 proteins from different Solanaceae species and from coffee displayed the 3 conserved motifs required for XyG fucosyltransferase activity.
Databáze: OpenAIRE