Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing Janthinobacterium lividum ERGS5:01

Autor: Sanjay Kumar, Rakshak Kumar, Vishal Acharya, Dharam Singh
Jazyk: angličtina
Rok vydání: 2018
Předmět:
Zdroj: Standards in Genomic Sciences, Vol 13, Iss 1, Pp 1-13 (2018)
Standards in Genomic Sciences
ISSN: 1944-3277
DOI: 10.1186/s40793-018-0313-3
Popis: A light pink coloured bacterial strain ERGS5:01 isolated from glacial stream water of Sikkim Himalaya was affiliated to Janthinobacterium lividum based on 16S rRNA gene sequence identity and phylogenetic clustering. Whole genome sequencing was performed for the strain to confirm its taxonomy as it lacked the typical violet pigmentation of the genus and also to decipher its survival strategy at the aquatic ecosystem of high elevation. The PacBio RSII sequencing generated genome of 5,168,928 bp with 4575 protein-coding genes and 118 RNA genes. Whole genome-based multilocus sequence analysis clustering, in silico DDH similarity value of 95.1% and, the ANI value of 99.25% established the identity of the strain ERGS5:01 (MCC 2953) as a non-violacein producing J. lividum. The genome comparisons across genus Janthinobacterium revealed an open pan-genome with the scope of the addition of new orthologous cluster to complete the genomic inventory. The genomic insight provided the genetic basis of freezing and frequent freeze-thaw cycle tolerance and, for industrially important enzymes. Extended insight into the genome provided clues of crucial genes associated with adaptation in the harsh aquatic ecosystem of high altitude. Electronic supplementary material The online version of this article (10.1186/s40793-018-0313-3) contains supplementary material, which is available to authorized users.
Databáze: OpenAIRE
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