FunSys: Software for functional analysis of prokaryotic transcriptome and proteome

Autor:	Vasco Azevedo, Pablo Henrique de Sá, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, Alex Ranieri, Agenor Valadares, Hivana Dall'Agnol, Artur Silva, Maria Paula Cruz Schneider, Anne Cybelle Pinto, Debmalya Barh, Nilson Antônio da Rocha Coimbra, Rafael A. Baraúna
Rok vydání:	2012
Předmět:	Functional analysis Bioinformatics business.industry Interface (Java) General Medicine Biology Proteomics Data science DNA sequencing Transcriptome Software Proteome Next-generation sequencing Gene expression Differential expression business
Zdroj:	Bioinformation
ISSN:	0973-2063 0973-8894
DOI:	10.6026/97320630008529
Popis:	The vast amount of data produced by next-generation sequencing (NGS) has necessitated the development of computational tools to assist in understanding the myriad functions performed by the biological macromolecules involved in heredity. In this work, we developed the FunSys programme, a stand-alone tool with an user friendly interface that enables us to evaluate and correlate differential expression patterns from RNA sequencing and proteomics datasets. The FunSys generates charts and reports based on the results of the analysis of differential expression to aid the interpretation of the results. Availability FunSys and a test dataset are freely available at https://sourceforge.net/projects/funsysufpa/. It requires Sun jdk 6 or higher and MySQL server 5.1 or higher.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f8c89cb36d6ba959c246aa424c6f526 https://doi.org/10.6026/97320630008529 Zobrazit plný text záznamu