The genomes of two key bumblebee species with primitive eusocial organization

Autor: Steffen Klasberg, Julie Blommaert, Reed M. Johnson, Ajay Nair, Nehad Saada, Christina Schulte, Terence Murphy, Silvio Erler, Kaat Cappelle, Seth M. Barribeau, Marco Mariotti, Cornelis J. P. Grimmelikhuijzen, Robin Ngo, Marianne Otte, Claire E. Johnson, Fernanda C. Humann, Andrew F. G. Bourke, Séverine D. Buechel, Kathrin Näpflin, Thomas J. Colgan, Taro Fuchikawa, David F. Clarke, Meaghan P. O’Neill, Louis du Plessis, Aarti Venkat, Katharina J. Hoff, Daniela Puiu, Kevin B. Flores, Ivan Meeus, Jireh Santibanez, Jisheng Liu, Olivier Christiaens, Guy Smagghe, Monika Marxer, Na Yu, Ariel D. Chipman, Kim C. Worley, Elizabeth J. Duncan, Matthew E. Hudson, Márcia Maria Gentile Bitondi, Carolina G. Santos, Irene Newsham, Michael Holder, Alvaro G. Hernandez, Vasco Koch, Ling-Ling Pu, Vandita Joshi, Florian Wolschin, Jeffrey D. Lozier, Peter K. Dearden, Mark Blaxter, Andrew G. Cridge, David Collins, Sophie Helbing, Robert M. Waterhouse, Francis M. F. Nunes, Eamonn B. Mallon, Christopher Pham, Frank Hauser, Tanja Gempe, Guy Bloch, Roderic Guigó, Tittu Mathew, Gene E. Robinson, David S. Marco Antonio, Tamas Dalmay, Mark J. F. Brown, Jinzhi Niu, Christine G. Elsik, Regula Schmid-Hempel, Jay D. Evans, Stephanie Dreier, Lars Chittka, Olav Rueppell, Marcus Coyle, Nina Rossié, Sandra L. Lee, Inga Nissen, Eva C. Winnebeck, Flávia Cristina de Paula Freitas, Francisco Câmara, Yuanqing Wu, Geoffrey Okwuonu, Frano Irvine, Eckart Stolle, Christie Kovar, Evgeny M. Zdobnov, F. Bernhard Kraus, Griet Debyser, Robert Mata, Arian Köhler, Andrew K. Jones, LaRonda Jackson, Daniel Guariz Pinheiro, Matthias Van Vaerenbergh, Matthew Beckers, Zilá Luz Paulino Simões, Martin Beye, Tiago Falcon, Megan Leask, Anna K. Bennett, Donna M. Muzny, Monica Munoz-Torres, Ben M. Sadd, Kate L. Ciborowski, Erich Bornberg-Bauer, Stephen Richards, Jürgen Gadau, Richard A. Gibbs, Amy J. Osborne, John G. Oakeshott, Hugh M. Robertson, Michelle P.M. Soares, Seirian Sumner, Klaus Hartfelder, Steven E. Scherer, Matthias Biewer, Jonathan H. Kidner, Joy Jayaseelan, Kerstin P. Blankenburg, Gabrielle A. Lockett, Liezl Francisco, Paul Schmid-Hempel, Dirk C. de Graaf, Didac Santesmasses, Steven L. Salzberg, Robin F. A. Moritz, Tatsuhiko Kadowaki, Björn D. Schmitt, Gro V. Amdam, H. Michael G. Lattorff, Peshtewani K. Aqrawi, Bart Devreese, Martin Hasselmann, Claire Asher, Rebecca Thornton, Luc Swevers, Kimberly K. O. Walden, DeNard Simmons, Lars S. Jermiin, Rossanah Cameron, Jiaxin Qu, James C. Carolan, Bertrand Fouks
Přispěvatelé: Illinois State Univ, ETH, E Carolina Univ, Hebrew Univ Jerusalem, Univ Ghent, Univ Otago, Univ Missouri, Georgetown Univ, Arizona State Univ, Univ Copenhagen, Univ Hohenheim, Univ Alabama, Univ Illinois, Univ Halle Wittenberg, Univ Geneva, Swiss Inst Bioinformat, MIT, MIT &Harvard, Univ Munster, Ctr Genom Regulat CRG, UPF, Ernst Moritz Arndt Univ Greifswald, Univ Calif Berkeley, Natl Lib Med, Norwegian Univ Food Sci, Univ E Anglia, Univ Dusseldorf, Univ Cologne, Universidade de São Paulo (USP), Univ Edinburgh, Royal Holloway Univ London, Maynooth Univ, Univ Bristol, CSIRO, Trin Coll Dublin, Zool Soc London, Swiss Fed Inst Technol, USDA ARS, N Carolina State Univ, Kyoto Univ, Inst Fed Educ Ciencia &Tecnol Sao Paulo, Ohio State Univ, Oxford Brookes Univ, Xian Jiaotong Liverpool Univ, Univ Hosp Halle Saale, German Ctr Integrat Biodivers Res iDiv, Univ Southampton, Univ Leicester, Universidade Federal de São Carlos (UFSCar), Universidade Estadual Paulista (Unesp), Univ N Carolina, Natl Ctr Sci Res Demokritos, Univ Munich, Baylor Coll Med, MD Anderson Canc Ctr, Univ Chicago, Queen Mary Univ London, Guangzhou Univ, Johns Hopkins Univ, Zdobnov, Evgeny
Jazyk: angličtina
Rok vydání: 2015
Předmět:
Zdroj: Web of Science
Repositório Institucional da UNESP
Universidade Estadual Paulista (UNESP)
instacron:UNESP
Sadd, B M, Barribeau, S M, Bloch, G, de Graaf, D C, Dearden, P, Elsik, C G, Gadau, J, Grimmelikhuijzen, C J, Hasselmann, M, Lozier, J D, Robertson, H M, Smagghe, G, Stolle, E, Van Vaerenbergh, M, Waterhouse, R M, Bornberg-Bauer, E, Klasberg, S, Bennett, A K, Câmara, F, Guigó, R, Hoff, K, Mariotti, M, Munoz-Torres, M, Murphy, T, Santesmasses, D, Amdam, G V, Beckers, M, Beye, M, Biewer, M, Bitondi, M M, Blaxter, M L, Bourke, A F, Brown, M J, Buechel, S D, Cameron, R, Cappelle, K, Carolan, J C, Christiaens, O, Ciborowski, K L, Clarke, D F, Colgan, T J, Collins, D H, Cridge, A G, Dalmay, T, Dreier, S, du Plessis, L, Duncan, E, Erler, S, Evans, J, Falcon, T, Flores, K, Freitas, F C, Fuchikawa, T, Gempe, T, Hartfelder, K, Hauser, F, Helbing, S, Humann, F C, Irvine, F, Jermiin, L S, Johnson, C E, Johnson, R M, Jones, A K, Kadowaki, T, Kidner, J H, Koch, V, Köhler, A, Kraus, F B, Lattorff, H M G, Leask, M, Lockett, G A, Mallon, E B, Antonio, D S M, Marxer, M, Meeus, I, Moritz, R F, Nair, A, Näpflin, K, Nissen, I, Niu, J, Nunes, F M, Oakeshott, J G, Osborne, A, Otte, M, Pinheiro, D G, Rossié, N, Rueppell, O, Santos, C G, Schmid-Hempel, R, Schmitt, B D, Schulte, C, Simões, Z L, Soares, M P, Swevers, L, Winnebeck, E C, Wolschin, F, Yu, N, Zdobnov, E M, Aqrawi, P K, Blankenburg, K P, Coyle, M, Francisco, L, Hernandez, A G, Holder, M, Hudson, M E, Jackson, L, Jayaseelan, J, Joshi, V, Kovar, C, Lee, S L, Mata, R, Mathew, T, Newsham, I F, Ngo, R, Okwuonu, G, Pham, C, Pu, L-L, Saada, N, Santibanez, J, Simmons, D, Thornton, R, Venkat, A, Walden, K K, Wu, Y-Q, Debyser, G, Devreese, B, Asher, C, Blommaert, J, Chipman, A D, Chittka, L, Fouks, B, Liu, J, O'Neill, M P, Sumner, S, Puiu, D, Qu, J, Salzberg, S L, Scherer, S E, Muzny, D M, Richards, S, Robinson, G E, Gibbs, R A, Schmid-Hempel, P & Worley, K C 2015, ' The genomes of two key bumblebee species with primitive eusocial organization ', Genome Biology, vol. 16, 76 . https://doi.org/10.1186/s13059-015-0623-3
Genome Biology, Vol. 16, No 76 (2015)
Genome Biology
Genome biology
Recercat. Dipósit de la Recerca de Catalunya
instname
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Europe PubMed Central
Sadd, B M, Barribeau, S M, Bloch, G, de Graaf, D C, Dearden, P, Elsik, C G, Gadau, J, Grimmelikhuijzen, C J P, Hasselmann, M, Lozier, J D, Robertson, H M, Smagghe, G, Stolle, E, Van Vaerenbergh, M, Waterhouse, R M, Bornberg-Bauer, E, Klasberg, S, Bennett, A K, Câmara, F, Guigó, R, Hoff, K, Mariotti, M, Munoz-Torres, M, Murphy, T, Santesmasses, D, Amdam, G V, Beckers, M, Beye, M, Biewer, M, Bitondi, M M G, Blaxter, M L, Bourke, A F G, Brown, M J F, Buechel, S D, Cameron, R, Cappelle, K, Carolan, J C, Christiaens, O, Ciborowski, K L, Clarke, D F, Colgan, T J, Collins, D H, Cridge, A G, Dalmay, T, Dreier, S, du Plessis, L, Duncan, E, Erler, S, Evans, J, Falcon, T, Flores, K, Freitas, F C P, Fuchikawa, T, Gempe, T, Hartfelder, K, Hauser, F, Helbing, S, Humann, F C, Irvine, F, Jermiin, L S, Johnson, C E, Johnson, R M, Jones, A K, Kadowaki, T, Kidner, J H, Koch, V, Köhler, A, Kraus, F B, Lattorff, H M G, Leask, M, Lockett, G A, Mallon, E B, Antonio, D S M, Marxer, M, Meeus, I, Moritz, R F A, Nair, A, Näpflin, K, Nissen, I, Niu, J, Nunes, F M F, Oakeshott, J G, Osborne, A, Otte, M, Pinheiro, D G, Rossié, N, Rueppell, O, Santos, C G, Schmid-Hempel, R, Schmitt, B D, Schulte, C, Simões, Z L P, Soares, M P M, Swevers, L, Winnebeck, E C, Wolschin, F, Yu, N, Zdobnov, E M, Aqrawi, P K, Blankenburg, K P, Coyle, M, Francisco, L, Hernandez, A G, Holder, M, Hudson, M E, Jackson, L, Jayaseelan, J, Joshi, V, Kovar, C, Lee, S L, Mata, R, Mathew, T, Newsham, I F, Ngo, R, Okwuonu, G, Pham, C, Pu, L-L, Saada, N, Santibanez, J, Simmons, D, Thornton, R, Venkat, A, Walden, K K O, Wu, Y-Q, Debyser, G, Devreese, B, Asher, C, Blommaert, J, Chipman, A D, Chittka, L, Fouks, B, Liu, J, O'Neill, M P, Sumner, S, Puiu, D, Qu, J, Salzberg, S L, Scherer, S E, Muzny, D M, Richards, S, Robinson, G E, Gibbs, R A, Schmid-Hempel, P & Worley, K C 2015, ' The genomes of two key bumblebee species with primitive eusocial organization ', Genome Biology, vol. 16, 76 . https://doi.org/10.1186/s13059-015-0623-3
Sadd, B M, Barribeau, S M, Bloch, G, de Graaf, D C, Dearden, P, Elsik, C G, Gadau, J, Grimmelikhuijzen, C, Hasselmann, M, Lozier, J D, Robertson, H M, Smagghe, G, Stolle, E, Van Vaerenbergh, M, Waterhouse, R M, Bornberg-Bauer, E, Klasberg, S, Bennett, A K, Câmara, F, Guigó, R, Hoff, K, Mariotti, M, Munoz-Torres, M, Murphy, T, Santesmasses, D, Amdam, G V, Beckers, M, Beye, M, Biewer, M, Bitondi, M M, Blaxter, M L, Bourke, A F, Brown, M J, Buechel, S D, Cameron, R, Cappelle, K, Carolan, J C, Christiaens, O, Ciborowski, K L, Clarke, D F, Colgan, T J, Collins, D H, Cridge, A G, Dalmay, T, Dreier, S, du Plessis, L, Duncan, E, Erler, S, Evans, J, Falcon, T, Flores, K, Freitas, F C, Fuchikawa, T, Gempe, T, Hartfelder, K, Hauser, F, Helbing, S, Humann, F C, Irvine, F, Jermiin, L S, Johnson, C E, Johnson, R M, Jones, A K, Kadowaki, T, Kidner, J H, Koch, V, Köhler, A, Kraus, F B, Lattorff, H M G, Leask, M, Lockett, G A, Mallon, E B, Antonio, D S M, Marxer, M, Meeus, I, Moritz, R F, Nair, A, Näpflin, K, Nissen, I, Niu, J, Nunes, F M, Oakeshott, J G, Osborne, A, Otte, M, Pinheiro, D G, Rossié, N, Rueppell, O, Santos, C G, Schmid-Hempel, R, Schmitt, B D, Schulte, C, Simões, Z L, Soares, M P, Swevers, L, Winnebeck, E C, Wolschin, F, Yu, N, Zdobnov, E M, Aqrawi, P K, Blankenburg, K P, Coyle, M, Francisco, L, Hernandez, A G, Holder, M, Hudson, M E, Jackson, L, Jayaseelan, J, Joshi, V, Kovar, C, Lee, S L, Mata, R, Mathew, T, Newsham, I F, Ngo, R, Okwuonu, G, Pham, C, Pu, L-L, Saada, N, Santibanez, J, Simmons, D, Thornton, R, Venkat, A, Walden, K K, Wu, Y-Q, Debyser, G, Devreese, B, Asher, C, Blommaert, J, Chipman, A D, Chittka, L, Fouks, B, Liu, J, O'Neill, M P, Sumner, S, Puiu, D, Qu, J, Salzberg, S L, Scherer, S E, Muzny, D M, Richards, S, Robinson, G E, Gibbs, R A, Schmid-Hempel, P & Worley, K C 2015, ' The genomes of two key bumblebee species with primitive eusocial organization ', Genome Biology (Online Edition), vol. 16, 76 . https://doi.org/10.1186/s13059-015-0623-3
GENOME BIOLOGY
ISSN: 1465-6906
1474-7596
DOI: 10.1186/s13059-015-0623-3
Popis: Made available in DSpace on 2015-10-21T20:31:01Z (GMT). No. of bitstreams: 0 Previous issue date: 2015-04-24. Added 1 bitstream(s) on 2015-10-22T09:48:01Z : No. of bitstreams: 1 WOS000353676700001.pdf: 2518339 bytes, checksum: d1f8d18bd059b76504f3fcd9aa639a74 (MD5) National Institutes of Health (NIH) Agriculture and Food Research Initiative Competitive grant from the USDA National Institute of Food and Agriculture Research Council of Norway (NFR) PEW Charitable Trust University of East Anglia, UK Israel Science Foundation (ISF) Biotechnology and Biological Sciences Research Council, UK University of East Anglia University of Alabama College of Arts and Sciences Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Marie Curie International Outgoing Fellowship Swiss National Science Foundation New Faculty Initiative Grant (NFIG) from Illinois State University College of Arts and Sciences DFG Instituto Nacional de Bioinformatica (INB) from ISCIII in Spain Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats.Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits.Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation. Illinois State Univ, Sch Biol Sci, Normal, IL 61790 USA ETH, Inst Integrat Biol, Expt Ecol, CH-8092 Zurich, Switzerland E Carolina Univ, Dept Biol, Greenville, NC 27858 USA Hebrew Univ Jerusalem, Alexander Silberman Inst Life Sci, Dept Ecol Evolut &Behav, Jerusalem, Israel Univ Ghent, Fac Sci, Lab Zoophysiol, B-9000 Ghent, Belgium Univ Otago, Dept Biochem, Labo Evolut &Dev Genet, Dunedin 9054, New Zealand Univ Otago, Dept Biochem, Natl Res Ctr Growth &Dev, Dunedin 9054, New Zealand Univ Missouri, Div Plant Sci, Div Anim Sci, Columbia, MO 65211 USA Univ Missouri, MU Informat Inst, Columbia, MO 65211 USA Georgetown Univ, Dept Biol, Washington, DC 20057 USA Arizona State Univ, Sch Life Sci, Tempe, AZ 85287 USA Univ Copenhagen, Dept Biol, Ctr Funct &Comparat Insect Gen, Copenhagen, Denmark Univ Hohenheim, Inst Anim Sci, D-70599 Stuttgart, Germany Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA Univ Illinois, Dept Entomol, Urbana, IL 61801 USA Univ Ghent, Fac Biosci Engn, Dept Crop Protect, Lab Agrozool, B-9000 Ghent, Belgium Univ Halle Wittenberg, Inst Biol, Wittenberg, Germany Univ Geneva, Sch Med, Dept Genet Med &Dev, CH-1211 Geneva, Switzerland Swiss Inst Bioinformat, CH-1211 Geneva, Switzerland MIT, Comp Sci &Artificial Intelligence Lab, Cambridge, MA 02139 USA MIT &Harvard, Broad Inst, Cambridge Ctr 7, Cambridge, MA 02142 USA Univ Munster, Inst Evolut &Biodivers, D-48149 Munster, Germany Ctr Genom Regulat CRG, Barcelona 08003, Spain UPF, Barcelona, Spain Ernst Moritz Arndt Univ Greifswald, Inst Math &Comp Sci, D-17487 Greifswald, Germany Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Genom Div, Berkeley, CA 94720 USA Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA Norwegian Univ Food Sci, Dept Chem Biotechnol &Food Sci, N-1432 As, Norway Univ E Anglia, Sch Comp Sci, Norwich NR4 7TJ, Norfolk, England Univ Dusseldorf, Inst Evolut Genet, D-40225 Dusseldorf, Germany Univ Cologne, Inst Genet, Cologne, Germany Univ Sao Paulo, Dept Biol, Fac Filosofia Ciencias &Letras Ribeirao Preto, BR-14040901 Ribeirao Preto, Brazil Univ Edinburgh, Ashworth Labs, Inst Evolutionary Biol &Edinburgh Gen, Edinburgh EH9 3FL, Midlothian, Scotland Univ E Anglia, Sch Biol Sci, Norwich NR4 7TJ, Norfolk, England Royal Holloway Univ London, Sch Biol Sci, London, England Maynooth Univ, Dept Biol, Co, Kildare, Ireland Univ Bristol, Sch Biol Sci, Bristol BS8 1TQ, Avon, England CSIRO, Land &Water Flagship, Canberra, ACT, Australia Trin Coll Dublin, Sch Nat Sci, Dept Zool, Dublin, Ireland Zool Soc London, Inst Zool, London NW1 4RY, England ETH, Inst Integrat Biol, Theoret Biol, CH-8092 Zurich, Switzerland Swiss Inst Bioinformat, Lausanne, Switzerland Swiss Fed Inst Technol, Dept Biosyst Sci &Engn, Computat Evolut, Basel, Switzerland USDA ARS, Bee Res Lab, Washington, DC 20250 USA Univ Sao Paulo, Dept Genet, Fac Med Ribeirao Preto, BR-14040900 Ribeirao Preto, Brazil N Carolina State Univ, Ctr Res Sci Computat, Raleigh, NC 27695 USA Kyoto Univ, Grad Sch Agr, Lab Insect Ecol, Kyoto, Japan Univ Sao Paulo, Dept Biol Celular &Mol &Bioagentes Patogen, Fac Med Ribeirao Preto, BR-14040900 Ribeirao Preto, Brazil Inst Fed Educ Ciencia &Tecnol Sao Paulo, BR-15991502 Matao, Brazil Ohio State Univ, Dept Entomol, Wooster, OH 44791 USA Oxford Brookes Univ, Fac Hlth &Life Sci, Dept Biol &Med Sci, Oxford OX3 0BP, England Xian Jiaotong Liverpool Univ, Dept Biol Sci, Suzhou, Peoples R China Univ Hosp Halle Saale, Dept Lab Med, Halle, Germany German Ctr Integrat Biodivers Res iDiv, Leipzig, Germany Univ Southampton, Southampton, Hants, England Univ Leicester, Dept Biol, Leicester, Leics, England Univ Fed Sao Carlos, Ctr Ciencias Biol &Saude, Dept Genet &Evolucao, BR-13565905 Sao Carlos, SP, Brazil Univ Estadual Paulista, Fac Ciencias Agr &Vet, Dept Tecnol, BR-14884900 Jaboticabal, Brazil Univ N Carolina, Dept Biol, Greensboro, NC 27403 USA Natl Ctr Sci Res Demokritos, Inst Biosci &Applicat, Athens, Greece Univ Munich, Munich, Germany Baylor Coll Med, Dept Mol &Human Genet, Human Genome Sequencing Ctr, Houston, TX 77030 USA Univ Illinois, Roy J Carver Biotechnol, Urbana, IL 61801 USA Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA MD Anderson Canc Ctr, Sch Hlth Profess, Mol Genet Technol Program, Unit 2, Houston, TX 77025 USA Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA Univ Ghent, Dept Biochem &Microbiol, Lab Prot Biochem &Biomol Engn, B-9000 Ghent, Belgium Queen Mary Univ London, Sch Biol &Chem Sci, Dept Biol &Expt Psychol, London E1 4NS, England Guangzhou Univ, Sch Life Sci, Guangzhou, Guangdong, Peoples R China Johns Hopkins Univ, McKusick Nathans Inst Genet Med, Ctr Computat Biol, Baltimore, MD 21205 USA Univ Illinois, Neurosci Program, Dept Entomol, Carl R Woese Inst Genom Biol, Urbana, IL 61801 USA Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista, Jaboticabal, 14884-900, Brazi National Institutes of Health (NIH): DP1 OD006416 National Institutes of Health (NIH): U54 HG003273 Agriculture and Food Research Initiative Competitive grant from the USDA National Institute of Food and Agriculture: 2010-65106-21301 FAPESP: 11/03171-5 Marie Curie International Outgoing Fellowship: PIOF-GA-2011-303312 Swiss National Science Foundation: 31003A-125350 Swiss National Science Foundation: 31003A-143936
Databáze: OpenAIRE
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