Multilocus sequence typing detects newPiscirickettsia salmonishybrid genogroup in Chilean fish farms: Evidence for genetic diversity and population structure
| Autor: | Jaime Figueroa, Jorge Mancilla‐Schulz, Ruben Avendaño-Herrera, Denise Haussmann, Alexis Martínez, Mónica Saldarriaga-Córdoba, Romina Albornoz, Derie E. Fuentes, Adolfo Isla, Alejandro Yáñez |
|---|---|
| Rok vydání: | 2019 |
| Předmět: |
Piscirickettsia
0301 basic medicine Linkage disequilibrium Genotype Veterinary (miscellaneous) Salmo salar Virulence Aquaculture Aquatic Science Biology Fish Diseases 03 medical and health sciences Piscirickettsia salmonis Animals Chile Phylogeny Genetics Genetic diversity Base Sequence Strain (biology) Genetic Variation 04 agricultural and veterinary sciences Phenotypic trait Oncorhynchus kisutch 030104 developmental biology Oncorhynchus mykiss Piscirickettsiaceae Infections 040102 fisheries 0401 agriculture forestry and fisheries Multilocus sequence typing Sequence Alignment Salmonidae Multilocus Sequence Typing |
| Zdroj: | Journal of Fish Diseases. 42:721-737 |
| ISSN: | 1365-2761 0140-7775 |
| Popis: | Piscirickettsia salmonisis the causative bacterial pathogen of piscirickettsiosis, a salmonid disease that causes notable mortalities in the worldwide aquaculture industry. Published research describes the phenotypic traits, virulence factors, pathogenicity and antibiotic-resistance potential for various P. salmonisstrains. However, evolutionary and genetic information is scarce for P. salmonis. The present study used multilocus sequence typing (MLST) to gain insight into the population structure and evolution of P. salmonis. Forty-two Chilean P. salmonisisolates, as well as the type strain LF-89T , were recovered from diseased Salmo salar, Oncorhynchus kisutchand Oncorhynchus mykissfrom two Chilean Regions. MLST assessed the loci sequences of dnaK, efp, fumC, glyA, murG, rpoD and trpB. Bioinformatics analyses established the genetic diversity among P. salmonis isolates (H = 0.5810). A total of 23 sequence types (ST) were identified, 53.48% of which were represented by ST1, ST5 and ST2. Population structure analysis through polymorphism patterns showed few polymorphic sites (218 nucleotides from 4,010 bp), while dN/dS ratio analysis indicated purifying selection for dnaK, epf, fumC, murG, and rpoD but neutral selection for the trpB loci. The standardized index of association indicated strong linkage disequilibrium, suggesting clonal population structure. However, recombination events were detected in a group of seven isolates. Findings included genogroups homologous to the LF-89T and EM-90 strains, as well as a seven-isolate hybrid genogroup recovered from both assessed regions (three O. mykiss and four S. salar isolates). The presented MLST scheme has comparative potential, with promising applications in studying distinct P. salmonis isolates (e.g., from different hosts, farms, geographical areas) and in understanding the epidemiology of this pathogen. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|
Plný text