Identification and Expression Analysis of EST-based Genes in the Bud of Lycoris longituba

Autor:	Hong Yu, You-Ming Cai, Xinye Zhang, Lu Zhang, Yong-Lan Cui, Jian Zhou, Lin Tao, Qiang Zhuge, Yan Zhou, Minren Huang
Jazyk:	angličtina
Rok vydání:	2016
Předmět:	Genetics Expressed sequence tag Letter Contig Lycoris longituba food and beverages Biology Biochemistry Computational Mathematics GenBank Gene expression Expression analysis Phrap EST Gene Molecular Biology
Zdroj:	Genomics, Proteomics & Bioinformatics
ISSN:	2210-3244 1672-0229
Popis:	To obtain a primary overview of gene diversity and expression pattern in Lycoris longituba, 4,992 ESTs (Expressed Sequence Tags) from L. longituba bud were sequenced and 4,687 cleaned ESTs were used for gene expression analysis. Clustered by the PHRAP program, 967 contigs and 1,343 singlets were obtained. Blast search showed that 179 contigs and 227 singlets (totally 1,066 ESTs) had homologues in GenBank and 3,621 ESTs were novel.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d8b417ee84e12e811a7f41aa7bfb7a5 http://europepmc.org/articles/PMC5172430 Zobrazit plný text záznamu