| Autor: |
Giska, Iwona, Sechi, Pierfrancesco, Wiesław Babik |
| Rok vydání: |
2015 |
| DOI: |
10.6084/m9.figshare.c.3620567_d1 |
| Popis: |
Supplementary materials. This file includes supplementary materials to the main text: Note A1. Detailed description of the Illumina sequencing and Stacks analysis of RAD tags. Table A1. Variation at COI (453 bp) in Lumbricus rubellus populations. Table A2. Variation at ATP6 (563 bp) in Lumbricus rubellus populations. Table A3. Pairwise genetic distances between mtDNA haplotypes H1-H27 found in Poland. Table A4. Mantel test and partial Mantel test statistics for Lumbricus rubellus populations sampled at sites with different levels of metal pollution. Table A5. Information on mtDNA sequence markers of Lumbricus rubellus and the PCR conditions. Table A6. Quality control of Illumina reads from the HiSeq 2000. Table A7. The Stacks commands used to process the RADseq data. Table A8. Comparison of Stacks results for different analysis parameters. Figure A1. Bayesian tree based on the COI sequences of Lumbricus rubellus. Figure A2. The Ln P(D) in Structure analysis of Lumbricus rubellus. Figure A3. Relation between the genetic distance (RADseq FST) and the log(geographic distance) in Lumbricus rubellus populations; a reduced major axis regression based on the Mantel test. Figure A4. Final coverage per RAD tag (mean ± SD) for individual earthworms of Lumbricus rubellus. Figure A5. Effect of the Stacks parameters on the final number of usable RAD tags in Lumbricus rubellus. (PDF 650 kb) |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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