Additional file 1 of Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle

Autor: Tiplady, Kathryn M., Lopdell, Thomas J., Reynolds, Edwardo, Sherlock, Richard G., Keehan, Michael, Johnson, Thomas JJ., Pryce, Jennie E., Davis, Stephen R., Spelman, Richard J., Harris, Bevin L., Garrick, Dorian J., Littlejohn, Mathew D.
Rok vydání: 2021
DOI: 10.6084/m9.figshare.15026536.v1
Popis: Additional file 1: Figure S1. Sequence resolution effects for highly significant wavenumber QTL. Effects shown for 14 base GWAS wavenumber QTL in high LD (R2 > 0.9) with a putative impact variant. Putative impact variants are defined as a splice region variant, or a moderate or high impact variant according to the SnpEff classification. 1-Mbp regions centred on the wavenumber QTL are shown. The x-axis represents positions on the UMD 3.1 Bos taurus reference genome; the y-axis shows the strength of association signal, represented as the −log10(p-value) of the effect for each variant. Effects are coloured based on the predicted effect of the variant on genes, according to the SnpEff classification. The horizontal red line shows the Bonferroni significance threshold of −log10(6.2e-13).
Databáze: OpenAIRE