Are the mitochondrial cox1 and cob genes suitable markers for species of Dinophysis Ehrenberg?

Autor: Nicolás Raho, Beatriz Reguera, Irma Marín, Francisco Rodríguez
Rok vydání: 2013
Předmět:
Zdroj: e-IEO: Repositorio Institucional Digital de Acceso Abierto del Instituto Español de Oceanografía
Instituto Español de Oceanografía
e-IEO. Repositorio Institucional Digital de Acceso Abierto del Instituto Español de Oceanografía
instname
ISSN: 1568-9883
DOI: 10.1016/j.hal.2013.05.012
Popis: The identification of Dinophysis species with similar morphology but different toxic (Diarrhetic Shellfish Poisoning, DSP) potential is a crucial task in harmful algae monitoring programmes. The taxonomic assignment of Dinophysis species using molecular markers is a difficult task due to extremely low interspecific variability within their nuclear ribosomal genes and intergenic regions. Mitochondrial cox1 gene has been proposed as a better specific marker for Dinophysis species based on its higher resolution for two morphologically related species (Dinophysis acuminata and Dinophysis ovum) of the ‘‘Dinophysis acuminata complex’’. In this study, the potential of two mitochondrial genes (mt cox1 and cob) to discriminate among six Dinophysis species (field isolates and cultures) associated with DSP events was explored. Neither mt cox1 nor cob genes provided enough resolution for all species of Dinophysis. The cob gene showed very poor resolution and grouped all Dinophysis spp. in a common clade. In contrast, the cox1 phylogeny distinguished 5 clades in the Dinophysiales – the ‘‘acuminata complex’’, the ‘‘caudata group’’, ‘‘acuta + norvegica’’ and Phalacromaspp. However, within the ‘‘D. acuminata complex’’ mtcox1 is so far the unique marker that differentiates D. acuminata from other species: isolates of D. ovum and Dinophysis sacculus had almost identical sequences (only four mismatches), but they were well separated from D. acuminata. D. acuminata and Dinophysis skagii (considered a life cycle stage of the former) showed identical cox1 sequences. Probes towards this gene can be useful in Mediterranean and Western Iberia sites where the co-occurrence of close morphotypes of D. acuminata and D. sacculus pose a problem for monitoring analyses. This is the first report on cultures of D. sacculus and its phylogenetic relation with other species of the D. acuminata complex.
Databáze: OpenAIRE
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