Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

Autor: Kathleen Marchal, Maarten Fauvart, Inge Thijs, Jan Michiels, Lore Cloots, Maarten Vercruysse, Kristof Engelen
Jazyk: angličtina
Rok vydání: 2010
Předmět:
RNA
Untranslated
lcsh:QH426-470
lcsh:Biotechnology
INTERGENIC REGIONS
RNA
Bacterial -- genetics
NcRNA transcription
Genomics
Biology
Genome
Rhizobium etli
Computational Biology -- methods
lcsh:TP248.13-248.65
ENCODED ANTISENSE RNAS
6S RNA
Genetics
REGULATORY RNAS
Rhizobium etli -- genetics
Oligonucleotide Array Sequence Analysis
GENE-EXPRESSION
Genetics & Heredity
Tiling array
Science & Technology
IDENTIFICATION
Sequence Analysis
RNA
SOLUBLE-RNAS
Gene Expression Profiling
RNA
Untranslated -- genetics
Biology and Life Sciences
Computational Biology
Sciences bio-médicales et agricoles
Non-coding RNA
SINORHIZOBIUM-MELILOTI
ENCODING GENES
Gene expression profiling
lcsh:Genetics
RNA
Bacterial
DNA-SEQUENCE ANALYSIS
Biotechnology & Applied Microbiology
ESCHERICHIA-COLI
bacteria
DNA microarray
Life Sciences & Biomedicine
Algorithms
Genome
Bacterial
Biotechnology
Research Article
Zdroj: BMC Genomics
BMC GENOMICS
BMC genomics, 11
BMC Genomics, Vol 11, Iss 1, p 53 (2010)
ISSN: 1471-2164
Popis: Non-coding RNAs (ncRNAs) play a crucial role in the intricate regulation of bacterial gene expression, allowing bacteria to quickly adapt to changing environments. In the past few years, a growing number of regulatory RNA elements have been predicted by computational methods, mostly in well-studied gamma-proteobacteria but lately in several alpha-proteobacteria as well. Here, we have compared an extensive compilation of these non-coding RNA predictions to intergenic expression data of a whole-genome high-resolution tiling array in the soil-dwelling alpha-proteobacterium Rhizobium etli.
Journal Article
Research Support, Non-U.S. Gov't
info:eu-repo/semantics/published
Databáze: OpenAIRE
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