Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative
| Autor: | Tim Ingleton, Mark S. Rayner, Bronwyn Holmes, Michelle Skuza, Kirsty McAllister, Jed A. Fuhrman, Lauren F. Messer, Nicole L. Patten, Swan Li San Sow, Paul D. van Ruth, Justin R. Seymour, Martin Ostrowski, Nahshon Siboni, Mark V. Brown, Andrew Bissett, Ian T. Paulsen, Thomas C. Jeffries, Kirianne Goossen, Tim Moltmann, Anna Fitzgerald, Anthony J. Richardson, Paul Malthouse, Claire H. Davies, Frank Coman, Jodie van de Kamp, Bonnie Laverock, Ryan Crossing, Jaume Bibiloni-Isaksson, Dion Matthew Frederick Frampton, Guy C. J. Abell, Tim Kahlke, Tiffanie M. Nelson, Levente Bodrossy, Pascal Craw, Stan S. Robert, Jonathan Windsor, Jason Koval |
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| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: |
Water microbiology
0301 basic medicine Statistics and Probability Data Descriptor Oceans and Seas 030106 microbiology Library and Information Sciences Latitude Education 03 medical and health sciences Temperate climate Sequencing Southern Hemisphere computer.programming_language Marine biology Bacteria biology Sequence Analysis RNA Ecology Microbiota Australia Pelagic zone Biodiversity biology.organism_classification Archaea Computer Science Applications 030104 developmental biology Geography Harbour Taxonomy (biology) Statistics Probability and Uncertainty Longitude computer Information Systems |
| Zdroj: | Scientific Data |
| ISSN: | 2052-4463 |
| DOI: | 10.1038/sdata.2018.130 |
| Popis: | Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences. |
| Databáze: | OpenAIRE |
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