Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
| Autor: | Olli-Pekka Smolander, Daniel Blande, Virpi Ahola, Pasi Rastas, Jaakko Tanskanen, Juhana I Kammonen, Vicencio Oostra, Lorenzo Pellegrini, Suvi Ikonen, Tad Dallas, Michelle F DiLeo, Anne Duplouy, Ilhan Cem Duru, Pauliina Halimaa, Aapo Kahilainen, Suyog S Kuwar, Sirpa O Kärenlampi, Elvira Lafuente, Shiqi Luo, Jenny Makkonen, Abhilash Nair, Maria de la Paz Celorio-Mancera, Ville Pennanen, Annukka Ruokolainen, Tarja Sundell, Arja I Tervahauta, Victoria Twort, Erik van Bergen, Janina Österman-Udd, Lars Paulin, Mikko J Frilander, Petri Auvinen, Marjo Saastamoinen |
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| Přispěvatelé: | Insect Symbiosis Ecology and Evolution, Organismal and Evolutionary Biology Research Programme, Ecology and Evolutionary Biology, Institute of Biotechnology, Centre for Information Technology, Evolution, Conservation, and Genomics, Life-history Evolution Research Group, Biosciences, Helsinki Institute of Life Science HiLIFE, Faculty of Biological and Environmental Sciences, Molecular and Integrative Biosciences Research Programme, Zoology, Department of Microbiology, DNA Sequencing and Genomics, Faculty Common Matters (Faculty of Biology and Environmental Sciences) |
| Jazyk: | angličtina |
| Rok vydání: | 2022 |
| Předmět: |
Male
Glanville fritillary DYNAMICS AcademicSubjects/SCI02254 Health Informatics Data Note Melitaea cinxia ANNOTATION Chromosomes Animals LARVAL DEVELOPMENT METAPOPULATION genome GENE-EXPRESSION QL FLIGHT CONSEQUENCES HERITABILITY QH spatial ecology 1184 Genetics developmental biology physiology Chromosome Mapping DISPERSAL RATE PGI Computer Science Applications Fritillaria 1181 Ecology evolutionary biology AcademicSubjects/SCI00960 Butterflies |
| Zdroj: | GigaScience |
| ISSN: | 2047-217X |
| Popis: | BackgroundThe Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome-level assembly of the butterfly's genome produced from Pacific Biosciences sequencing of a pool of males, combined with a linkage map from population crosses.ResultsThe final assembly size of 484 Mb is an increase of 94 Mb on the previously published genome. Estimation of the completeness of the genome with BUSCO indicates that the genome contains 92–94% of the BUSCO genes in complete and single copies. We predicted 14,810 genes using the MAKER pipeline and manually curated 1,232 of these gene models.ConclusionsThe genome and its annotated gene models are a valuable resource for future comparative genomics, molecular biology, transcriptome, and genetics studies on this species. |
| Databáze: | OpenAIRE |
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