High-throughput discovery of novel developmental phenotypes

Autor: Dickinson, Mary E, Flenniken, Ann M, Ji, Xiao, Teboul, Lydia, Wong, Michael D, White, Jacqueline K, Meehan, Terrence F, Weninger, Wolfgang J, Westerberg, Henrik, Adissu, Hibret, Baker, Candice N, Bower, Lynette, Brown, James M, Caddle, L Brianna, Chiani, Francesco, Clary, Dave, Cleak, James, Daly, Mark J, Denegre, James M, Doe, Brendan, Dolan, Mary E, Edie, Sarah M, Fuchs, Helmut, Gailus-Durner, Valerie, Galli, Antonella, Gambadoro, Alessia, Gallegos, Juan, Guo, Shiying, Horner, Neil R, Hsu, Chih-Wei, Johnson, Sara J, Kalaga, Sowmya, Keith, Lance C, Lanoue, Louise, Lawson, Thomas N, Lek, Monkol, Mark, Manuel, Marschall, Susan, Mason, Jeremy, McElwee, Melissa L, Newbigging, Susan, Nutter, Lauryl MJ, Peterson, Kevin A, Ramirez-Solis, Ramiro, Rowland, Douglas J, Ryder, Edward, Samocha, Kaitlin E, Seavitt, John R, Selloum, Mohammed, Szoke-Kovacs, Zsombor, Tamura, Masaru, Trainor, Amanda G, Tudose, Ilinca, Wakana, Shigeharu, Warren, Jonathan, Wendling, Olivia, West, David B, Wong, Leeyean, Yoshiki, Atsushi, International Mouse Phenotyping Consortium, Laboratory, Jackson, Infrastructure Nationale PHENOMIN, Institut Clinique De La Souris (ICS), Laboratories, Charles River, MRC Harwell, Toronto Centre For Phenogenomics, Wellcome Trust Sanger Institute, RIKEN BioResource Center, MacArthur, Daniel G, Tocchini-Valentini, Glauco P, Gao, Xiang, Flicek, Paul, Bradley, Allan, Skarnes, William C, Justice, Monica J, Parkinson, Helen E, Moore, Mark, Wells, Sara, Braun, Robert E, Svenson, Karen L, De Angelis, Martin Hrabe, Herault, Yann, Mohun, Tim, Mallon, Ann-Marie, Henkelman, R Mark, Brown, Steve DM, Adams, David J, Lloyd, KC Kent, McKerlie, Colin, Beaudet, Arthur L, Bućan, Maja, Murray, Stephen A
Přispěvatelé: Bradley, Allan [0000-0002-2349-8839], Apollo - University of Cambridge Repository
Rok vydání: 2016
Předmět:
General Science & Technology
Knockout
Sequence Homology
Penetrance
Inbred C57BL
Lethal
Polymorphism
Single Nucleotide

Imaging
Mice
Imaging
Three-Dimensional

Essential
Institut Clinique de la Souris
Genetics
Animals
Humans
2.1 Biological and endogenous factors
Disease
Wellcome Trust Sanger Institute
Aetiology
Polymorphism
Conserved Sequence
Mice
Knockout

Infrastructure Nationale PHENOMIN
Pediatric
Genes
Essential

MRC Harwell
Mammalian
Human Genome
Charles River Laboratories
Single Nucleotide
Embryo
Mammalian

RIKEN BioResource Center
High-Throughput Screening Assays
Mice
Inbred C57BL

Phenotype
Genes
Embryo
Toronto Centre for Phenogenomics
Three-Dimensional
Mutation
Congenital Structural Anomalies
Genes
Lethal

International Mouse Phenotyping Consortium
Jackson Laboratory
Genome-Wide Association Study
Biotechnology
Zdroj: Nature, vol 537, iss 7621
Popis: Approximately one-third of all mammalian genes are essential for life. Phenotypes resulting from knockouts of these genes in mice have provided tremendous insight into gene function and congenital disorders. As part of the International Mouse Phenotyping Consortium effort to generate and phenotypically characterize 5,000 knockout mouse lines, here we identify 410 lethal genes during the production of the first 1,751 unique gene knockouts. Using a standardized phenotyping platform that incorporates high-resolution 3D imaging, we identify phenotypes at multiple time points for previously uncharacterized genes and additional phenotypes for genes with previously reported mutant phenotypes. Unexpectedly, our analysis reveals that incomplete penetrance and variable expressivity are common even on a defined genetic background. In addition, we show that human disease genes are enriched for essential genes, thus providing a dataset that facilitates the prioritization and validation of mutations identified in clinical sequencing efforts.
Databáze: OpenAIRE