Identification of Gene Mutations in Autosomal Dominant Polycystic Kidney Disease through Targeted Resequencing
Autor: | Jamie L. Sundsbak, Robert A. Sikkink, Vicente E. Torres, Katharina Hopp, Christopher G. Winearls, Peter C. Harris, Yean Kit Lee, Christopher J. Ward, Bruce W. Eckloff, Sandro Rossetti, Vickie J. Kubly |
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Jazyk: | angličtina |
Rok vydání: | 2012 |
Předmět: |
TRPP Cation Channels
Pseudogene Autosomal dominant polycystic kidney disease Gene mutation Biology urologic and male genital diseases Polymerase Chain Reaction symbols.namesake Clinical Research Gene duplication medicine Humans Allele Genetics Sanger sequencing Electronic Data Processing PKD1 urogenital system General Medicine Sequence Analysis DNA medicine.disease Polycystic Kidney Autosomal Dominant female genital diseases and pregnancy complications Nephrology Mutation symbols Allelic heterogeneity |
Popis: | Mutations in two large multi-exon genes, PKD1 and PKD2, cause autosomal dominant polycystic kidney disease (ADPKD). The duplication of PKD1 exons 1-32 as six pseudogenes on chromosome 16, the high level of allelic heterogeneity, and the cost of Sanger sequencing complicate mutation analysis, which can aid diagnostics of ADPKD. We developed and validated a strategy to analyze both the PKD1 and PKD2 genes using next-generation sequencing by pooling long-range PCR amplicons and multiplexing bar-coded libraries. We used this approach to characterize a cohort of 230 patients with ADPKD. This process detected definitely and likely pathogenic variants in 115 (63%) of 183 patients with typical ADPKD. In addition, we identified atypical mutations, a gene conversion, and one missed mutation resulting from allele dropout, and we characterized the pattern of deep intronic variation for both genes. In summary, this strategy involving next-generation sequencing is a model for future genetic characterization of large ADPKD populations. |
Databáze: | OpenAIRE |
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