Albirhodobacter confluentis sp. nov., isolated from an estuary
| Autor: | Hye Su Jung, Che Ok Jeon, Seogang Hyun, Jong Woo Hyeon, Jaegeun Lee |
|---|---|
| Rok vydání: | 2017 |
| Předmět: |
0301 basic medicine
DNA Bacterial Ubiquinone medicine.disease_cause Microbiology 03 medical and health sciences Phylogenetics Albirhodobacter marinus RNA Ribosomal 16S Republic of Korea medicine Rhodobacteraceae Ecology Evolution Behavior and Systematics Phospholipids Phylogeny Base Composition biology Strain (chemistry) Phylogenetic tree Fatty Acids General Medicine Sequence Analysis DNA 16S ribosomal RNA biology.organism_classification Halophile Bacterial Typing Techniques 030104 developmental biology Biochemistry Estuaries Bacteria |
| Zdroj: | International journal of systematic and evolutionary microbiology. 68(1) |
| ISSN: | 1466-5034 |
| Popis: | A Gram-stain-negative and strictly aerobic, moderately halophilic bacterium, designated strain S1-47T, was isolated from estuary sediment in South Korea. Cells were non-motile rods showing oxidase- and catalase-positive activities. Growth was observed at 10–30 °C (optimum, 25 °C), at pH 5.0–8.0 (optimum, pH 6.0–7.0) and in the presence of 0–6.0 % (w/v) NaCl (optimum, 2.0 %). Strain S1-47T contained summed feature 3 (comprising C16 : 1ω7c and/or C16 : 1ω6c), summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c) and C16 : 0 as major cellular fatty acids and ubiquinone-10 as the sole isoprenoid quinone. Phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and three unidentified lipids were detected as polar lipids. The G+C content of the genomic DNA was 69.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain S1-47T formed a tight phylogenetic lineage with Albirhodobacter marinus N9T. Strain S1-47T was most closely related to Albirhodobacter marinus N9T with a 99.4 % 16S rRNA gene sequence similarity. DNA–DNA relatedness levels between strain S1-47T and the type strain of Albirhodobacter marinus were 49.8–52.2 %. Based on the phenotypic, chemotaxonomic and molecular features, strain S1-47T clearly represents a novel species of the genus Albirhodobacter , for which the name Albirhodobacter confluentis sp. nov. is proposed. The type strain is S1-47T (=KACC 18804T=JCM 31536T). |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|