The complete chloroplast genome of the Taiwan red pine Pinus taiwanensis (Pinaceae)
| Autor: | Yu-Meng Zu, Yu-Jin Wang, Zhong-Hu Li, Wan-Lin Dong, Min-Feng Fang, Tuan-Tuan Deng, Ruo-Nan Wang |
|---|---|
| Rok vydání: | 2015 |
| Předmět: |
0301 basic medicine
Inverted repeat Taiwan Pinus taiwanensis Genome 03 medical and health sciences Gene Order Botany Genetics Genome Chloroplast Molecular Biology Phylogeny biology Phylogenetic tree DNA Chloroplast Intron Sequence Analysis DNA Ribosomal RNA Pinaceae biology.organism_classification Maximum parsimony 030104 developmental biology Chloroplast DNA RNA Ribosomal Genome Mitochondrial Genome Plant |
| Zdroj: | Mitochondrial DNA Part A. 27:2732-2733 |
| ISSN: | 2470-1408 2470-1394 |
| Popis: | The complete nucleotide sequence of the Taiwan red pine Pinus taiwanensis Hayata chloroplast genome (cpDNA) is determined in this study. The genome is composed of 119,741 bp in length, containing a pair of very short inverted repeat (IRa and IRb) regions of 495 bp, which was divided by a large single-copy (LSC) region of 65,670 bp and a small single-copy (SSC) region of 53,080 bp in length. The cpDNA contained 115 genes, including 74 protein-coding genes (73 PCG species), 4 ribosomal RNA genes (four rRNA species) and 37 tRNA genes (22 tRNA species). Out of these genes, 12 harbored a single intron, and one (rps12) contained a couple of introns. The overall AT content of the Taiwan red pine cpDNA is 61.5%, while the corresponding values of the LSC, SSC and IR regions are 62.2%, 60.6% and 63.6%, respectively. A maximum parsimony phylogenetic analysis suggested that the genus Pinus, Picea, Abies and Larix were strongly supported as monophyletic, and the cpDNA of P. taiwanensis is closely related to that of P. thunbergii. |
| Databáze: | OpenAIRE |
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