Transcriptomic analyses reveal highly conserved plant amalgavirus genomes in different species of Allium

Autor:	José Ailton Cruz Macedo dos Santos, Adriano Márcio Freire Silva, Júlio Carlos Polimeni de Mesquita, Rosana Blawid
Jazyk:	angličtina
Rok vydání:	2022
Předmět:	China Infectious Diseases Gene Expression Profiling Virology RNA Viruses General Medicine Transcriptome Allium
Zdroj:	Acta virologica. 66
ISSN:	1336-2305
DOI:	10.4149/av_2022_102
Popis:	This work aims to study amalgavirus diversity in different species of allium collected around the world. Transcriptomic data of 19 Sequence Read Archive runs available at GenBank, as well as RNA-seq data generated from onion tissue from fields in Brazil were used to assemble nine allium cepa amalgavirus 1 (AcAV-1) and nine allium cepa amalgavirus 2 (AcAV-2) genomes from different species of allium worldwide. Sequence demarcation tool analyses of RdRp amino acid sequences revealed identities above 99% within each species, except for an isolate of AcAV-1 from Allium escalonicum from China. This work contributes to the understanding of the genetic diversity of amalgaviruses that infect the genus Allium. Keywords: amalgaviruses; Allium transcriptomic datasets; Allium sp.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e47b3aeeea7cef595f0a5d52166c822 Zobrazit plný text záznamu