Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
| Autor: | Roedhy Poerwanto, Deden Derajat Matra, Winarso Drajad Widodo, Eiichi Inoue, Sobir, Azis Natawijaya, Arya Widura Ritonga |
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| Rok vydání: | 2019 |
| Předmět: |
Rambutan
0303 health sciences Multidisciplinary biology Contig Accession number (library science) De novo transcriptome assembly Computational biology lcsh:Computer applications to medicine. Medical informatics biology.organism_classification Tropical fruit Transcriptome 03 medical and health sciences 0302 clinical medicine Agricultural and Biological Science Aril lcsh:R858-859.7 Nephelium lcsh:Science (General) 030217 neurology & neurosurgery lcsh:Q1-390 030304 developmental biology |
| Zdroj: | Data in Brief, Vol 22, Iss, Pp 566-569 (2019) Data in Brief |
| ISSN: | 2352-3409 |
| DOI: | 10.1016/j.dib.2018.12.034 |
| Popis: | Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201–11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359 . The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001–IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id . |
| Databáze: | OpenAIRE |
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