Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors

Autor: Clément Sire, Alexandra Litchinko, Hugues Chaté, Alfonso Pérez Escudero, Valentin Lecheval, Daniel S. Calovi, Ugo Lopez, Guy Theraulaz
Přispěvatelé: Centre de Recherches sur la Cognition Animale (CRCA), Centre de Biologie Intégrative (CBI), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut des sciences du cerveau de Toulouse. (ISCT), Université Toulouse - Jean Jaurès (UT2J)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-CHU Toulouse [Toulouse]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse - Jean Jaurès (UT2J)-CHU Toulouse [Toulouse]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées, LAboratoire PLasma et Conversion d'Energie (LAPLACE), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Service de physique de l'état condensé (SPEC - UMR3680), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), AT&T Bell Laboratories, Centre National de la Recherche Scientifique (CNRS)-Institut des sciences du cerveau de Toulouse. (ISCT), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-CHU Toulouse [Toulouse]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse - Jean Jaurès (UT2J)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-CHU Toulouse [Toulouse]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre de Biologie Intégrative (CBI), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Groningen Institute for Evolutionary Life Sciences [Groningen] (GELIFES), University of Groningen [Groningen], Department of Physics [MIT Cambridge], Massachusetts Institute of Technology (MIT), Physique Statistique des Systèmes Complexes (LPT) (PhyStat), Laboratoire de Physique Théorique (LPT), Institut de Recherche sur les Systèmes Atomiques et Moléculaires Complexes (IRSAMC), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche sur les Systèmes Atomiques et Moléculaires Complexes (IRSAMC), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Centre de Recherches sur la Cognition Animale - UMR5169 (CRCA), Institut des sciences du cerveau de Toulouse. (ISCT), Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre Hospitalier Universitaire de Toulouse (CHU Toulouse)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Centre Hospitalier Universitaire de Toulouse (CHU Toulouse)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre de Biologie Intégrative (CBI), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université de Toulouse (UT), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Hemelrijk group
Jazyk: angličtina
Rok vydání: 2018
Předmět:
0301 basic medicine
DYNAMICS
Collective behavior
Physiology
Computer science
Velocity
Social Sciences
01 natural sciences
TRACKING
[SCCO]Cognitive science
Medicine and Health Sciences
Psychology
Body Size
[NLIN]Nonlinear Sciences [physics]
lcsh:QH301-705.5
ComputingMilieux_MISCELLANEOUS
Animal Behavior
Behavior
Animal
Ecology
biology
Physics
[SDV.BA]Life Sciences [q-bio]/Animal biology
Fishes
Temperature
SOCIAL INTERACTIONS
Eukaryota
Classical Mechanics
Contrast (statistics)
Signal Processing
Computer-Assisted
Attraction
Computational Theory and Mathematics
COLLECTIVE BEHAVIOR
[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]
Modeling and Simulation
Vertebrates
Physical Sciences
SIMULATION
Fish
Biological system
Research Article
[INFO.INFO-CC]Computer Science [cs]/Computational Complexity [cs.CC]
[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]
Acceleration
Geometry
ANIMAL GROUPS
Models
Biological
Diversity of fish
Motion
03 medical and health sciences
Cellular and Molecular Neuroscience
MOVEMENT
SCHOOLS
ddc:570
0103 physical sciences
Hemigrammus
Genetics
Animals
PARTICLES
Interpersonal Relations
14. Life underwater
Social Behavior
010306 general physics
[NLIN.NLIN-AO]Nonlinear Sciences [physics]/Adaptation and Self-Organizing Systems [nlin.AO]
Molecular Biology
Swimming
Ecology
Evolution
Behavior and Systematics
Probability
Behavior
Stochastic Processes
Biological Locomotion
Stochastic process
Organisms
Biology and Life Sciences
Computational Biology
Collective Animal Behavior
biology.organism_classification
[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation
Fish
Collective Human Behavior
030104 developmental biology
Radii
lcsh:Biology (General)
RULES
Anisotropy
Collective animal behavior
Zoology
Mathematics
Software
Zdroj: PLoS Computational Biology
PLoS Computational Biology, Public Library of Science, 2018, 14 (1), pp.e1005933. ⟨10.1371/journal.pcbi.1005933⟩
PLoS Computational Biology, Vol 14, Iss 1, p e1005933 (2018)
PLoS Computational Biology, 2018, 14 (1), pp.e1005933. ⟨10.1371/journal.pcbi.1005933⟩
PLoS Computational Biology, 14(1):1005933. PUBLIC LIBRARY SCIENCE
ISSN: 1553-734X
1553-7358
Popis: The development of tracking methods for automatically quantifying individual behavior and social interactions in animal groups has open up new perspectives for building quantitative and predictive models of collective behavior. In this work, we combine extensive data analyses with a modeling approach to measure, disentangle, and reconstruct the actual functional form of interactions involved in the coordination of swimming in Rummy-nose tetra (Hemigrammus rhodostomus). This species of fish performs burst-and-coast swimming behavior that consists of sudden heading changes combined with brief accelerations followed by quasi-passive, straight decelerations. We quantify the spontaneous stochastic behavior of a fish and the interactions that govern wall avoidance and the reaction to a neighboring fish, the latter by exploiting general symmetry constraints for the interactions. In contrast with previous experimental works, we find that both attraction and alignment behaviors control the reaction of fish to a neighbor. We then exploit these results to build a model of spontaneous burst-and-coast swimming and interactions of fish, with all parameters being estimated or directly measured from experiments. This model quantitatively reproduces the key features of the motion and spatial distributions observed in experiments with a single fish and with two fish. This demonstrates the power of our method that exploits large amounts of data for disentangling and fully characterizing the interactions that govern collective behaviors in animals groups.
Author summary We disentangle, quantify, and model the interactions involved in the control and coordination of burst-and-coast swimming in the fish Hemigrammus rhodostomus. We find that the interactions of fish with the arena wall result in avoidance behavior and those with a neighbor result in a combination of attraction and alignment behaviors whose effects depend on the distance and the relative position and orientation to that neighbor. Then we show that a model entirely based on experimental data confirms that the combination of these individual level interactions quantitatively reproduces the dynamics of swimming of a single fish, the coordinated motion in groups of two fish, and the consequences of interactions on their spatial distribution.
Databáze: OpenAIRE
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