New Graph Similarity Measurements based on Isomorphic and Nonisomorphic Data Fusion and their Use in the Prediction of the Pharmacological Behavior of Drugs
Autor: | Ruiz, Irene Luque, Cuadrado, Manuel Urbano, Gómez-Nieto, Miguel Ángel |
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Jazyk: | angličtina |
Rok vydání: | 2007 |
Předmět: | |
DOI: | 10.5281/zenodo.1076224 |
Popis: | New graph similarity methods have been proposed in this work with the aim to refining the chemical information extracted from molecules matching. For this purpose, data fusion of the isomorphic and nonisomorphic subgraphs into a new similarity measure, the Approximate Similarity, was carried out by several approaches. The application of the proposed method to the development of quantitative structure-activity relationships (QSAR) has provided reliable tools for predicting several pharmacological parameters: binding of steroids to the globulin-corticosteroid receptor, the activity of benzodiazepine receptor compounds, and the blood brain barrier permeability. Acceptable results were obtained for the models presented here. {"references":["","Rouvray, D.H.; Balaban, A.T. Chemical Applications of Graph Theory. Applications of Graph Theory. Wilson, R.J.; Beineke, L.W. (Eds.). Academic Press. 1979, 177-221.","Ivanciuc, O.; Balaban, A.T. The Graph Description of Chemical Structures. In Topological Indices and Related Descriptors in QSAR and QSPR. Devillers, J., Balaban, A. T. (Eds.). Gordon and Breach Science Publishers. The Netherlands. 1999, 59-167.","Willett, P. Chemical Similarity Searching. J. Chem. Inf. Comput. Sci. 1998, 38, 983-996.","Downs, G.M.; Barnard, J.M. Clustering and Their Uses in Computational Chemistry. In Reviews in Computational Chemistry. Lipkowitz, K.B., Boyd, D.B. (Eds.) Wiley-VCH. New York. 2003, 18, 1-39.","Urbano Cuadrado, M.; Luque Ruiz, I.; Gómez-Nieto, M.A. A New Quantitative Structure-Property Relationship Based on Topological Distances on Non-isomorphic Subgraphs. In Lectures Series on Computer and Computational Sciences: Advances in Computational Methods in Sciences and Engineering. Brill Academic Publisher, 2005. 135-138.","Cerruela García, G., Luque Ruiz, I., Gómez-Nieto, M.A. Step-by-Step Calculation of All Maximum Common Substructures through a Constraint Satisfaction Based Algorithm. J. Chem. Inf. Comput. Sci. 2004, 44, 30-41.","Wold, S.; Sjostrom, M.; Eriksson, L. PLS-Regression: A Basic Tool of Chemometrics, Chemom. Intell. Lab. Syst. 2001, 58, 109-130.","Silverman, B.D. The Thirty-one Benchmark Steroids Revisited: Comparative Molecular Moment Analysis (CoMMA) with Principal Component Regression. Quant. Struct.-Act. Relat. 2000, 19, 237-246.","Coats, E.A. The CoMFA Steroids as a Benchmark Dataset for Development of 3D QSAR Methods. In 3D QSAR in Drug Design. Kubinyi, H., Folkers, G., Martin, Y.C. (Eds.). Kluwer/Escom. Dordrecht. 1998, 199-213.\n[10] Verli, H.; Girão Albuquerque, M.; Bicca de Alencastro, R.; Barreiro, E.J. Local Intersection Volume: A New 3D Descriptor Applied to Develop a 3D-QSAR Pharmacophore Model for Benzodiazepine Receptor Ligands, Eur. J. Med. Chem. 2002, 37, 219-229."]} |
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