Spectral broadening of the Soret band in myoglobin: an interpretation by the full spectrum of low-frequency modes from a normal modes analysis
| Autor: | Maurizio Leone, Antonio Cupane, Fritz G. Parak, Eugenio Vitrano, Niklas Engler, Lorenzo Cordone, Marco Cammarata |
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| Přispěvatelé: | CUPANE A, CAMMARATA M, CORDONE L, LEONE M, VITRANO E, ENGLER N, PARAK F |
| Rok vydání: | 2004 |
| Předmět: |
Myoglobin
Molecular Dynamics Simulation active site Chemistry Myoglobin Spectrum Analysis Anharmonicity Biophysics Analytical chemistry Temperature General Medicine Molecular physics Vibration Spectral line Models Chemical Normal mode Molecular vibration Frequency domain Computer Simulation Time domain Harmonic oscillator Doppler broadening |
| Zdroj: | European biophysics journal : EBJ. 34(7) |
| ISSN: | 0175-7571 |
| Popis: | In this work the temperature dependence of the Soret band line shape in carbon-monoxy myoglobin is re-analyzed by using both the full correlator approach in the time domain and the frequency domain approach. The new analyses exploit the full density of vibrational states of carbon-monoxy myoglobin available from normal modes analysis, and avoid the artificial division of the entire set of vibrational modes coupled to the Soret transition into "high-frequency" and "low-frequency" subsets; the frequency domain analysis, however, makes use of the so-called short-times approximation, while the time domain one avoids it. Time domain and frequency domain analyses give very similar results, thus supporting the applicability of the short-times approximation to the analysis of hemeprotein spectra; in particular, they clearly indicate the presence of spectral heterogeneity in the Soret band of carbon-monoxy myoglobin. The analyses also show that a temperature dependence of the Gaussian width parameter steeper than the hyperbolic cotangent law predicted by the Einstein harmonic oscillator and/or a temperature dependence of inhomogeneous broadening are not sufficient to obtain quantitative information on the magnitude of an-harmonic contributions to the iron-heme plane motion. However, the dependence of the previous two quantities may be used to obtain semiquantitative information on the overall coupling of the Soret transition to the low-frequency modes and therefore on the dynamic properties of the heme pocket in different states of the protein. |
| Databáze: | OpenAIRE |
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