Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain
| Autor: | Linda U. Obi, Ashira Roopnarain, Rasheed Adeleke, Cornelius Carlos Bezuidenhout, Tomasz J. Sanko, Memory Tekere, Tawanda E. Maguvu |
|---|---|
| Přispěvatelé: | 28606817 - Sanko, Tomasz Janusz, 12540110 - Bezuidenhout, Cornelius Carlos, 20116799 - Adeleke, Rasheed Adegbola, 34538356 - Maguvu, Tawanda E. |
| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
Acidogenesis lcsh:Biotechnology Biogas Biology 01 natural sciences Applied Microbiology and Biotechnology Genome Microbiology 03 medical and health sciences Plasmid 010608 biotechnology lcsh:TP248.13-248.65 Whole genome sequence Genome size Gene Serratia marcescens Whole genome sequencing 0303 health sciences Plant-growth-promotion 030306 microbiology Hydrolysis Genome project biology.organism_classification Biotechnology Research Article |
| Zdroj: | Biotechnology Reports Biotechnology Reports, Vol 28, Iss, Pp e00542-(2020) |
| ISSN: | 2215-017X |
| Popis: | Highlights • Serratia marcescens 39_H1 could enhance the hydrolysis of lignocellulosic biomass. • Serratia marcescens 39_H1 is a plant growth promoting organism. • Genome analysis showed diverse potential biotechnological application of organism. • This is an original report on the hydrolytic and acidogenic attributes ofSerratia marcescens 39_H1 for biogas production. Here, we report a high quality annotated draft genome of Serratia marcescens 39_H1, a Gram-negative facultative anaerobe that was isolated from an anaerobic digester. The strain exhibited hydrolytic/acidogenic properties by significantly improving methane production when used as a single isolate inoculum during anaerobic digestion of water hyacinth and cow dung. The total genome size of the isolate was 5,106,712 bp which corresponds to an N50 of 267,528 and G + C content of 59.7 %. Genome annotation with the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) predicted a total of 4,908 genes of which 4,755 were protein coding genes; there were no plasmids detected. A number of genes associated with hydrolytic/acidogenic activities as well as other metabolic activities were identified and discussed. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|