Fully Automated RNAscope In Situ Hybridization Assays for Formalin‐Fixed Paraffin‐Embedded Cells and Tissues
Autor: | Henry Lamparski, Emily Park, Casey Kernag, Melanie Miller, Yuling Luo, Xiao-Jun Ma, Nan Su, Xingyong Wu, Courtney Anderson, Bingqing Zhang, Jeffrey Kim, Thomas Laver, Emerald Butko |
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Jazyk: | angličtina |
Rok vydání: | 2016 |
Předmět: |
0301 basic medicine
BIOMARKER GENE EXPRESSION Formalin fixed paraffin embedded Cell AUTOMATION In situ hybridization Computational biology Biology Biochemistry 03 medical and health sciences chemistry.chemical_compound Fixatives 0302 clinical medicine Formaldehyde Neoplasms Gene expression medicine Biomarkers Tumor Humans Molecular Biology RNAscope In Situ Hybridization Messenger RNA Paraffin Embedding Benchmarks RNA Cell Biology Molecular biology 030104 developmental biology medicine.anatomical_structure chemistry Fully automated 030220 oncology & carcinogenesis DNA HeLa Cells |
Zdroj: | Journal of Cellular Biochemistry |
ISSN: | 1097-4644 0730-2312 |
Popis: | Biomarkers such as DNA, RNA, and protein are powerful tools in clinical diagnostics and therapeutic development for many diseases. Identifying RNA expression at the single cell level within the morphological context by RNA in situ hybridization provides a great deal of information on gene expression changes over conventional techniques that analyze bulk tissue, yet widespread use of this technique in the clinical setting has been hampered by the dearth of automated RNA ISH assays. Here we present an automated version of the RNA ISH technology RNAscope that is adaptable to multiple automation platforms. The automated RNAscope assay yields a high signal‐to‐noise ratio with little to no background staining and results comparable to the manual assay. In addition, the automated duplex RNAscope assay was able to detect two biomarkers simultaneously. Lastly, assay consistency and reproducibility were confirmed by quantification of TATA‐box binding protein (TBP) mRNA signals across multiple lots and multiple experiments. Taken together, the data presented in this study demonstrate that the automated RNAscope technology is a high performance RNA ISH assay with broad applicability in biomarker research and diagnostic assay development. J. Cell. Biochem. 117: 2201–2208, 2016. © 2016 The Authors. Journal of Cellular Biochemistry Published by Wiley Periodicals, Inc. |
Databáze: | OpenAIRE |
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