Additional file 12 of Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection

Autor: Quang, Nam Nguyen, Goudey, Sophie, Ségéral, Emmanuel, Ammara Mohammad, Lemoine, Sophie, Blugeon, Corinne, Versapuech, Margaux, Jean-Christophe Paillart, Berlioz-Torrent, Clarisse, Emiliani, Stéphane, Gallois-Montbrun, Sarah
Rok vydání: 2020
DOI: 10.6084/m9.figshare.12819232.v1
Popis: Additional file 12: Figure S7. Correlation of viral isoform abundances quantified by ONT sequencing between biological replicates of HeLa cells expressing either wild-type or U1 D2upEx snRNA. Relative abundances of HIV-1 spliced RNAs were calculated as a % of the total number of viral annotated reads. Results were compared using a linear regression model supplied by Prism 7 between WT U1 HeLa cells samples: (a) sample 1 vs sample 2; (b) sample 1 vs sample 3; (c) sample 2 vs sample 3, and between U1 D2upEx HeLa samples : (d) sample 1 vs sample 2; (e) sample 1 vs sample 3; (f) sample 2 vs sample 3. Pearson correlation coefficients r are indicated. p
Databáze: OpenAIRE