De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Autor:	Xianran Li, Marcela K. Tello-Ruiz, Doreen Ware, Qiuhan Jiang, Robert J. Schmitz, Margaret R. Woodhouse, Carson M. Andorf, Dong Won Kim, Zhenyuan Lu, R. Kelly Dawe, Ethalinda K. S. Cannon, Arun S. Seetharam, Kevin Fengler, Ksenia V. Krasileva, David Kudrna, Amanda M. Gilbert, Jeffrey Ross-Ibarra, Rebecca D. Piri, Alexandre P. Marand, Yinjie Qiu, Nancy Manchanda, Christine H. O’Connor, Jonathan I. Gent, Silas Tittes, Michael Syring, Sharon Wei, Rafael Della Coletta, Candice N. Hirsch, Shujun Ou, Matthew B. Hufford, Jianing Liu, Na Wang, David E. Hufnagel, Samantha J. Snodgrass, Erin Baggs, Kapeel Chougule, Tingting Guo, Jianming Yu, Andrew Olson, John L. Portwood, Bo Wang, Sarah Pedersen, Yibing Zeng, Asher I. Hudson, William A. Ricci, Victor Llaca
Rok vydání:	2021
Předmět:	0106 biological sciences Multifactorial Inheritance Genotype General Science & Technology Population Centromere Sequence assembly Computational biology Biology Regulatory Sequences Nucleic Acid Genes Plant 01 natural sciences Genome Polymorphism Single Nucleotide Zea mays Chromosomes Plant Article Structural variation 03 medical and health sciences Genetic variation Nested association mapping education 030304 developmental biology Disease Resistance Plant Diseases 2. Zero hunger Comparative genomics 0303 health sciences education.field_of_study Multidisciplinary Whole Genome Sequencing Chromosome Mapping Genetic Variation High-Throughput Nucleotide Sequencing Molecular Sequence Annotation Genome project Sequence Analysis DNA DNA Methylation Tetraploidy Phenotype Transcriptome Genome Plant 010606 plant biology & botany
Zdroj:	Science Science (New York, N.Y.), vol 373, iss 6555
ISSN:	1095-9203
Popis:	An a-maize-ing set of genomes Maize is an important crop cultivated worldwide. As maize spread across the world, selection for local environments resulted in variation, but the impact on differences between the genome has not been quantified. By producing high-quality genomic sequences of the 26 lines used in the maize nested association mapping panel, Hufford et al . map important traits and demonstrate the diversity of maize. Examining RNA and methylation of genes across accessions, the authors identified a core set of maize genes. Beyond this core set, comparative analysis across lines identified high levels of variation in the total set of genes, the maize pan-genome. The value of this resource was further exemplified by mapping quantitative traits of interest, including those related to pathogen resistance. —LMZ
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::049e6d62319fe8a3b4a9a5eaa6db695c https://pubmed.ncbi.nlm.nih.gov/34353948 Zobrazit plný text záznamu Plný text ve formátu PDF Plný text ve formátu HTML
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