Genome sequence and analysis of the tuber crop potato
| Autor: | Xun Xu, Gerard J. Bishop, Robbie Waugh, David Marshall, Sanwen Huang, Istvan Nagy, Zagorski W, Pawel Szczesny, Erwin Datema, Hu Q, Diana Martinez, Herrera Mdel R, Giovanni Giuliano, He Y, Zhang Z, Aska Goverse, De la Cruz G, Du Y, Marina Iovene, Shengkai Pan, Bo Zhang, Robert Gromadka, Alexey V. Beletsky, Frank Guzman, Gaetano Perrotta, Gisella Orjeda, Marc Ghislain, O'Brien K, Massa Ga, Chakrabarti Sk, Jiming Jiang, Jun Wang, Dan Bolser, Mads Sønderkær, van Eck H, Sanjeev Kumar Sharma, Hanhui Kuang, Jan Gawor, Ruiqiang Li, Marco Pietrella, Hekkert Bt, Li G, Kåre Lehmann Nielsen, Mu D, David M. A. Martin, Boris B. Kuznetsov, Brieanne Vaillancourt, Buell Cr, van Ham Rc, Destefanis M, Glenn J. Bryan, Brett R Whitty, Olga Ponce, de Boer J, Jeanne M. E. Jacobs, Lundback S, Susan Thomson, Theo Borm, Bjorn Kloosterman, Di Genova A, Konstantin G. Skryabin, Tatjana V. Kolganova, Andrey V. Mardanov, Shifeng Cheng, Paolo Facella, Merideth Bonierbale, Xiong X, Luis Aníbal Diambra, Yang Y, Richard G. F. Visser, Shuang Yang, Liang C, Mark Fiers, Dan Milbourne, Patil Vu, Youjun Zhang, Qu D, Nilo Mejía, Peixiang Ni, Torres M, Barreiro Le, He J, Sergio Enrique Feingold, Christian W. B. Bachem, Alicia N. Massa, Geoffroy M, Richard E. Veilleux, Boris Sagredo, Xie B, Li Y, Xu J, Dean DellaPenna, Giovana Augusta Torres, Gengyun Zhang, Roberto Lozano, Nikolai V. Ravin, Lin H |
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| Jazyk: | angličtina |
| Rok vydání: | 2011 |
| Předmět: |
0106 biological sciences
Gene Expression Regulation Plant Gene Expression eukaryotic genomes maize 01 natural sciences Genome Laboratorium voor Plantenveredeling Gene Expression Regulation Plant Gene Duplication Haplotype Inbreeding depression Inbreeding 2. Zero hunger Genetics Tuber 0303 health sciences Heterozygosity Multidisciplinary Depression EPS-3 Homozygote digestive oral and skin physiology food and beverages tool Genomics elements rna-seq Multigene Family Evolution Molecular potato reveals Genome Plant Heterozygote Genome evolution Bioinformatics Molecular Sequence Data Biology in-vitro Genes Plant Evolution Molecular 03 medical and health sciences BIOS Applied Bioinformatics Gene mapping Genetic variation Bioinformatica Gene Laboratorium voor Nematologie Ciencias Exactas Plant Diseases Solanum tuberosum 030304 developmental biology Whole genome sequencing Ploidies resistance genes solanum fungi Genetic Variation Molecular Sequence Annotation Immunity Innate Immunity Innate Plant Breeding Haplotypes Food Security Genome sequence purl.org/pe-repo/ocde/ford#3.01.00 [https] identification Laboratory of Nematology Genome Plant 010606 plant biology & botany |
| Zdroj: | The Potato Genome Sequencing Consortium 2011, ' Genome sequence and analysis of the tuber crop potato ', Nature, vol. 475 . https://doi.org/10.1038/nature10158 Nature (Lond.) 475 (2011): 189–195. doi:10.1038/nature10158 info:cnr-pdr/source/autori:The Potato Genome Sequencing Consortium _ Xu, Xun; Pan, Shengkai; Cheng, Shifeng; Zhang, Bo; Mu, Desheng; Ni, Peixiang; Zhang, Gengyun; Yang, Shuang; Li, Ruiqiang; Wang, Jun; Orjeda, Gisella; Guzman, Frank; Torres, Michael; Lozano, Roberto; Ponce, Olga; Martinez, Diana; De la Cruz, German; Chakrabarti, S. K.; Patil, Virupaksh U.; Skryabin, Konstantin G.; Kuznetsov, Boris B.; Ravin, Nikolai V.; Kolganova, Tatjana V.; Beletsky, Alexey V.; Mardanov, Andrei V.; Di Genova, Alex; Bolser, Daniel M.; Martin, David M. A.; Li, Guangcun; Yang, Yu; Kuang, Hanhui; Hu, Qun; Xiong, Xingyao; Bishop, Gerard J.; Sagredo, Boris; Mejia, Nilo; Zagorski, Wlodzimierz; Gromadka, Robert; Gawor, Jan; Szczesny, Pawel; Huang, Sanwen; Zhang, Zhonghua; Liang, Chunbo; He, Jun; Li, Ying; He, Ying; Xu, Jianfei; Zhang, Youjun; Xie, Binyan; Du, Yongchen; Qu, Dongyu; Bonierbale, Merideth; Ghislain, Marc; del Rosario Herrera, Maria; Giuliano, Giovanni; Pietrella, Marco; Perrotta, Gaetano; Facella, Paolo; O'Brien, Kimberly; Feingold, Sergio E.; Barreiro, Leandro E.; Massa, Gabriela A.; Diambra, Luis; Whitty, Brett R.; Vaillancourt, Brieanne; Lin, Haining; Massa, AliciaN.; Geoffroy, Michael; Lundback, Steven; DellaPenna, Dean; Buell, C. Robin; Sharma, Sanjeev Kumar; Marshall, David F.; Waugh, Robbie; Bryan, Glenn J.; Destefanis, Marialaura; Nagy, Istvan; Milbourne, Dan; Thomson, Susan J.; Fiers, Mark; Jacobs, Jeanne M. E.; Nielsen, Kare L.; Sonderkaer, Mads; Iovene, Marina; Torres, Giovana A.; Jiang, Jiming; Veilleux, Richard E.; Bachem, Christian W. B.; de Boer, Jan; Borm, Theo; Kloosterman, Bjorn; van Eck, Herman; Datema, Erwin; Hekkert, Bas Te Lintel; Goverse, Aska; van Ham, Roeland C. H. J.; Visser, Richard G. F./titolo:Genome sequence and analysis of the tuber crop potato/doi:10.1038%2Fnature10158/rivista:Nature (Lond.)/anno:2011/pagina_da:189/pagina_a:195/intervallo_pagine:189–195/volume:475 Nature, 475, 189-195 Nature Artículos CONICYT CONICYT Chile instacron:CONICYT SEDICI (UNLP) Universidad Nacional de La Plata instacron:UNLP Nature 475 (2011) |
| ISSN: | 0028-0836 |
| DOI: | 10.1038/nature10158 |
| Popis: | Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop. La lista completa de autores que integran el documento puede consultarse en el archivo. Facultad de Ciencias Exactas |
| Databáze: | OpenAIRE |
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