| Autor: |
Palacios-Gimenez, Octavio M., Koelman, Julia, Palmada-Flores, Marc, Bradford, Tessa M., Jones, Karl K., Cooper, Steven J. B., Kawakami, Takeshi, Suh, Alexander |
| Rok vydání: |
2020 |
| DOI: |
10.6084/m9.figshare.13474233.v1 |
| Popis: |
Additional file 1: Table S1. Total numbers of differentially expressed TE subfamilies (consensus sequences) containing all TEs between sexes and tissues in two chromosomal races of the viatica species group. Table S2. Most abundant tandem repeats (TRs) in the P24X0 sex chromosome race (male reads). The repeats are sorted in descending order of the genomic read proportion. Table S3. Most abundant tandem repeats (TRs) in the P24XY sex chromosome race (male reads). The repeats are sorted in descending order of the male genome proportion. Table S4. Most abundant tandem repeats (TRs) in the P45bX0 sex chromosome (male reads). The repeats are sorted in descending order of the genome proportion. Table S5. Most abundant tandem repeats (TRs) in the P45bXY sex chromosome race (male reads). The repeats are sorted in descending order of the genome proportion. Table S6. Presence of 129 satDNA families across four chromosomal races of viatica species group. Homology search based on 1) all-against-all RepeatMasker comparison of satDNA consensus sequences among races, and on 2) genomic read mapping against the consensus sequences as reference in RepeatMasker. Each column represents the library of satDNAs of the race, and each row indicates the common satDNAs between them. satDNAs highlighted in gray were used as references for read mapping. The signs positive (+) and negative (−) indicate presence or absence of the satDNA family in the race based on read mapping. Columns with satDNA name non highlighted in gray indicates homologous consensus sequences between races, based on all-against-all RepeatMasker comparison of satDNA consensus sequences. Table S7. The number of satDNA families that were present in only one of the races or absent in at least one race. Table S8. Statistics of the 102 satDNA families shared across the four chromosomal races of the viatica species group. 50 satDNA families show differential amplification in copy number (cv > 80%). GP = Genome proportion. K2P = Kimura 2-parameter distance. sd = standard deviation. cv = coefficient of variation. |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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