Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula
| Autor: | Agustina Undabarrena, Felipe A. Arenas, Claudia M. Muñoz-Villagrán, Fabián A. Cornejo, Claudio C. Vásquez, Mauricio Arenas-Salinas, Katterinne N. Mendez, Maximiliano Figueroa, Eduardo H. Morales, Eduardo Castro-Nallar |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
Bioinformatics lcsh:Medicine Genome Microbiology Ter genes General Biochemistry Genetics and Molecular Biology 03 medical and health sciences Extremophiles Phylogenomics Polyphyly Psychrobacter Gene Genetics Whole genome sequencing biology Contig Phylogenetic tree General Neuroscience lcsh:R Tellurite resistance General Medicine Genomics biology.organism_classification 030104 developmental biology Antarctica General Agricultural and Biological Sciences |
| Zdroj: | PeerJ PeerJ, Vol 6, p e4402 (2018) |
| ISSN: | 2167-8359 |
| Popis: | ThePsychrobactergenus is a cosmopolitan and diverse group of aerobic, cold-adapted, Gram-negative bacteria exhibiting biotechnological potential for low-temperature applications including bioremediation. Here, we present the draft genome sequence of a bacterium from thePsychrobactergenus isolated from a sediment sample from King George Island, Antarctica (3,490,622 bp; 18 scaffolds; G + C = 42.76%). Using phylogenetic analysis, biochemical properties and scanning electron microscopy the bacterium was identified asPsychrobacter glacincolaBNF20, making it the first genome sequence reported for this species.P. glacincolaBNF20 showed high tellurite (MIC 2.3 mM) and chromate (MIC 6.0 mM) resistance, respectively. Genome-wide nucleotide identity comparisons revealed thatP. glacincolaBNF20 is highly similar (>90%) to other uncharacterizedPsychrobacterspp. such as JCM18903, JCM18902, and P11F6. Bayesian multi-locus phylogenetic analysis showed thatP. glacincolaBNF20 belongs to a polyphyletic clade with other bacteria isolated from polar regions. A high number of genes related to metal(loid) resistance were found, including tellurite resistance genetic determinants located in two contigs: Contig LIQB01000002.1 exhibited five ter genes, each showing putative promoter sequences (terACDEZ), whereas contig LIQB1000003.2 showed a variant of the terZ gene. Finally, investigating the presence and taxonomic distribution of ter genes in the NCBI’s RefSeq bacterial database (5,398 genomes, as January 2017), revealed that 2,623 (48.59%) genomes showed at least one ter gene. At the family level, most (68.7%) genomes harbored one ter gene and 15.6% exhibited five (includingP. glacincolaBNF20). Overall, our results highlight the diverse nature (genetic and geographic diversity) of thePsychrobactergenus, provide insights into potential mechanisms of metal resistance, and exemplify the benefits of sampling remote locations for prospecting new molecular determinants. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|