Additional file 1 of Gut microbiome composition, not alpha diversity, is associated with survival in a natural vertebrate population

Autor: Worsley, Sarah F., Davies, Charli S., Mannarelli, Maria-Elena, Hutchings, Matthew I., Komdeur, Jan, Burke, Terry, Dugdale, Hannah L., Richardson, David S.
Rok vydání: 2021
DOI: 10.6084/m9.figshare.17305314.v1
Popis: Additional file 1. Supplemental tables and figures referenced in the text. Fig. S1. Sample completeness curves. Fig. S2. The similarity of A) alpha, and B) beta diversity measures across Seychelles warbler faecal samples. Table S1. The results of post-hoc pairwise PERMANOVA analyses investigating differences in gut microbiome composition across A) age classes and B) sampling periods. Fig. S3. Differences in gut microbiome (GM) composition across age classes in the Seychelles warbler. Fig. S4. A Principal Components Analysis (PCA) of Euclidean distances between the gut microbiome (GM) of male and female individuals. Fig. S5. Results of a betadisper analysis showing differences in gut microbiome variability (distance to centroid) across sampling periods. Table S2. Linear Mixed Model analyses investigating the association between gut microbiome alpha diversity and body condition in the Seychelles warbler. Table S3. PERMANOVA analysis of gut microbiome distances and body condition in A) juvenile and B) adult Seychelles warblers. Table S4. Generalised Linear Model investigating the association between gut microbiome alpha diversity and survival in the Seychelles warbler. Fig. S6. Survivorship across different bird age classes. Table S5. Amplicon sequencing variants (ASVs) that were significantly, differentially abundant (Padj < 0.05) in the gut microbiomes of adult Seychelles warbler individuals that survived, versus those that died, by the next breeding season.
Databáze: OpenAIRE