Comparative Genomics of Domesticated and Wild Sunflower: Complete Chloroplast and Mitochondrial Genomes
| Autor: | N. V. Markin, Alexander V. Usatov, Maksim Makarenko, N. A. Usatov, Kirill Azarin, O. F. Gorbachenko |
|---|---|
| Rok vydání: | 2016 |
| Předmět: |
0301 basic medicine
Whole genome sequencing Comparative genomics Genetics Mitochondrial DNA food and beverages Single-nucleotide polymorphism Biology Genome General Biochemistry Genetics and Molecular Biology Chloroplast 03 medical and health sciences 030104 developmental biology Chloroplast DNA Coding region General Agricultural and Biological Sciences |
| Zdroj: | OnLine Journal of Biological Sciences. 16:71-75 |
| ISSN: | 1608-4217 |
| Popis: | The entire chloroplast and mitochondrial genomes of domesticated and wild type sunflower were sequenced. The comparative analysis of chloroplast genomes revealed 43 variant sites, including 21 polymorphic SSR loci and 22 SNPs. About 14 variant sites were found by collation of mitochondrial DNA (mtDNA), among them 4 SSRs, 8 SNPs and 2 deletions. About 9 SNPs were located in coding region of chloroplast DNA (cpDNA) and single SNP was mapped in mitochondrial gene. Only three SNPs caused amino acid changes: Two SNPs in cpDNA and one mtDNA SNP. Despite the fact that sunflower mitochondrial genome sequence is twice as long as chloroplast genome sequence, mtDNA has one third as much variant sites than cpDNA. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|