Complete chloroplast genome of Cercidiphyllum japonicum (Cercidiphyllaceae), a tertiary relic endangered tree
| Autor: | Bing-bing Liu, Meng-ben Wang, Hao Qin, Na Duan |
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| Rok vydání: | 2018 |
| Předmět: |
0106 biological sciences
0301 basic medicine Genetics Phylogenetic tree Inverted repeat Pseudogene Cercidiphyllum japonicum Biology Ribosomal RNA biology.organism_classification 010603 evolutionary biology 01 natural sciences Genome 03 medical and health sciences 030104 developmental biology Cercidiphyllum Gene Ecology Evolution Behavior and Systematics |
| Zdroj: | Conservation Genetics Resources. 11:113-115 |
| ISSN: | 1877-7260 1877-7252 |
| DOI: | 10.1007/s12686-017-0973-0 |
| Popis: | The dioecious relic Cercidiphyllum japonicum is one of two species of the sole genus Cercidiphyllum (Cercidiphyllaceae). Using an Illumina platform, we sequenced its complete chloroplast genome. Our study reveals that C. japonicum have a typical cp genome of 159,854 bp in length, comprised of a large single-copy region of 88,035 bp, a small single-copy region of 30,535 bp, and two inverted repeat regions of 20,642 bp, respectively. A total of 131 genes, 84 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and one pseudogenes were identified. Phylogenetic analysis indicate that C. japonicum is closely related to the species of Sinowilsonia henryi. |
| Databáze: | OpenAIRE |
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