Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico
| Autor: | Ivan Arroyo-Herrera, Jessica Maldonado-Hernández, Georgina Meza-Radilla, Paulina Estrada-de los Santos, Violeta Larios-Serrato, William B. Whitman, Fernando-Uriel Rojas-Rojas, María Soledad Vásquez-Murrieta |
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| Rok vydání: | 2020 |
| Předmět: |
0301 basic medicine
Rhizosphere biology Cupriavidus metallidurans Cupriavidus necator Strain (biology) 030106 microbiology General Medicine biology.organism_classification Agave 16S ribosomal RNA Microbiology 03 medical and health sciences 030104 developmental biology Cupriavidus Botany Ecology Evolution Behavior and Systematics Bacteria |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 70:4165-4170 |
| ISSN: | 1466-5034 1466-5026 |
| DOI: | 10.1099/ijsem.0.004263 |
| Popis: | During the isolation of bacteria from the Agave L. rhizosphere in northeast Mexico, four strains with similar BOX-PCR patterns were collected. The 16S rRNA gene sequences of all four strains were very similar to each other and that of the type strains of Cupriavidus metallidurans CH34T (98.49 % sequence similarity) and Cupriavidus necator N-1T (98.35 %). The genome of strain ASC-9842T was sequenced and compared to those of other Cupriavidus species. ANIb and ANIm values with the most closely related species were lower than 95%, while the in silico DNA–DNA hybridization values were also much lower than 70 %, consistent with the proposal that they represent a novel species. This conclusion was supported by additional phenotypic and chemotaxonomic analyses. Therefore, the name Cupriavidus agavae sp. nov. is proposed with the type strain ASC-9842T (=LMG 26414T=CIP 110327T). |
| Databáze: | OpenAIRE |
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