Complete genome sequence of a grapevine Roditis leaf discoloration-associated virus (GRLDaV) variant from South Africa

Autor:	Leonidas Lotos, Rachelle Bester, Varvara I. Maliogka, Abraham Vermeulen, Gerhard Pietersen, Hans J. Maree
Rok vydání:	2021
Předmět:	Whole genome sequencing 0303 health sciences 030306 microbiology viruses Nucleic acid sequence Sequence assembly General Medicine Biology Virology Genome Badnavirus 03 medical and health sciences Human virome ORFS 030304 developmental biology Sequence (medicine)
Zdroj:	Archives of Virology. 166:2041-2044
ISSN:	1432-8798 0304-8608
DOI:	10.1007/s00705-021-05079-x
Popis:	High-throughput sequencing (HTS) was used to construct the virome profile of an old grapevine-leafroll-diseased grapevine (Vitis vinifera). De novo assembly of HTS data showed a complex infection, including a virus sequence with similarity to viruses of the genus Badnavirus, family Caulimoviridae. The complete genome sequence of this virus consists of 7090 nucleotides and has four open reading frames (ORFs). Genome organisation and phylogenetic analysis identify this virus as a divergent variant of grapevine Roditis leaf discoloration-associated virus (GRLDaV) with 90% nucleotide sequence identity to isolate w4 (NC_027131). This is the first genome sequence of a South African variant of GRLDaV.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_________::ace3f8c1d236fa8f6a3325f56ec557dd https://doi.org/10.1007/s00705-021-05079-x Zobrazit plný text záznamu Full text from SpringerLink