A 2.46M reads/s Genome Sequencing Accelerator using a 625 Processing-Element Array
| Autor: | Xiao Wu, Zhehong Wang, Satish Narayanasamy, Arun Subramaniyan, Reetuparna Das, Satoru Miyoshi, Daichi Fujiki, David Blaauw, Makoto Yasuda, Tianjun Zhang, Masaru Kawaminami |
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| Rok vydání: | 2020 |
| Předmět: |
Footprint (electronics)
Application-specific integrated circuit Xeon Computer science Processing element 020208 electrical & electronic engineering 0202 electrical engineering electronic engineering information engineering 02 engineering and technology Parallel computing Performance improvement Triangular array DNA sequencing |
| Zdroj: | CICC |
| DOI: | 10.1109/cicc48029.2020.9075900 |
| Popis: | We present an accelerator for seed-extension, a critical and computational intensive step in genome sequencing. The accelerator consists of a triangular array of 25×25 custom design processing elements implementing a string-independent automata. It achieves 2.46M reads/s, a ~1800x performance improvement, and 27x smaller silicon footprint compared to a Xeon E5420. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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