Alpha globin variation in the long-tailed macaque suggests malaria selection

Autor: Bridget S. Penman, Sunetra Gupta, F. Rangkuti, B. Bia, Andrew P. Dobson, Patrik G. Flammer, Amy Boyd, Stephen G. Preston, N. J. Rose, Frédéric B. Piel, Christina L. Faust, Adrian Smith
Rok vydání: 2020
Předmět:
DOI: 10.1101/2020.10.21.344853
Popis: Human haemoglobin variants, such as sickle, confer protection against death from malaria; consequently, frequencies of such variants are often greatly elevated in humans from malaria endemic regions. Among non-human primates, the long-tailed macaque,Macaca fascicularis, also displays substantial haemoglobin variation. Almost allM. fascicularishaemoglobin variation is in the alpha globin chain, encoded by two linked genes:HBA1andHBA2. We demonstrate that alpha globin variation inM. fasciculariscorrelates with the strength of malaria selection. We identify a range of missense mutations inM. fascicularisalpha globin and demonstrate that some of these exhibit a strikingHBA1orHBA2specificity, a pattern consistent with computational simulations of selection on genes exhibiting copy number variation. We propose thatM. fascicularisaccumulated amino acid substitutions in its alpha globin genes under malaria selection, in a process that closely mirrors, but does not entirely converge with, human malaria adaptation.
Databáze: OpenAIRE