Multiple Alignment of Structures Using Center Of ProTeins
Autor: | Satish Ch. Panigrahi, Kaushik Roy, Asish Mukhopadhyay |
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Rok vydání: | 2015 |
Předmět: |
0303 health sciences
Multiple sequence alignment Computer science 030302 biochemistry & molecular biology Center (group theory) Root mean square Dynamic programming 03 medical and health sciences Structural bioinformatics Mascot Multiple structure alignment Consensus structure Algorithm 030304 developmental biology |
Zdroj: | Bioinformatics Research and Applications ISBN: 9783319190471 ISBRA |
DOI: | 10.1007/978-3-319-19048-8_24 |
Popis: | Multiple Structure Alignment (MStA) is a fundamental problem in Computational Biology and proteomics in particular. Therefore, a number of algorithms have been proposed, chief among which are MUSTANG, POSA, MultiProt, CE-MC. In this paper we propose a new algorithm MASCOT that imitates the center-star algorithm for multiple sequence alignment. We report the root mean square deviations (RMSD) and execution times for a large number of alignments and discuss their significance. We also include a comparison of the execution times of MASCOT with the well-known and widely-used algorithm MUSTANG. |
Databáze: | OpenAIRE |
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