Multiple Alignment of Structures Using Center Of ProTeins

Autor: Satish Ch. Panigrahi, Kaushik Roy, Asish Mukhopadhyay
Rok vydání: 2015
Předmět:
Zdroj: Bioinformatics Research and Applications ISBN: 9783319190471
ISBRA
DOI: 10.1007/978-3-319-19048-8_24
Popis: Multiple Structure Alignment (MStA) is a fundamental problem in Computational Biology and proteomics in particular. Therefore, a number of algorithms have been proposed, chief among which are MUSTANG, POSA, MultiProt, CE-MC. In this paper we propose a new algorithm MASCOT that imitates the center-star algorithm for multiple sequence alignment. We report the root mean square deviations (RMSD) and execution times for a large number of alignments and discuss their significance. We also include a comparison of the execution times of MASCOT with the well-known and widely-used algorithm MUSTANG.
Databáze: OpenAIRE