Genome of Serratia plymuthica UBCF_13, Insight into diverse unique traits
| Autor: | Robi Trivano, Roza Yunita, Raudhatul Fatiah, Lily Syukriani, Djong Hon Tjong, Nurefni Azizah, Irfan Suliansyah, Jamsari Jamsari |
|---|---|
| Rok vydání: | 2021 |
| Předmět: |
Genetics
Whole genome sequencing General Immunology and Microbiology biology viruses Strain (biology) virus diseases General Medicine biochemical phenomena metabolism and nutrition biology.organism_classification Genome digestive system diseases General Biochemistry Genetics and Molecular Biology DNA sequencing General Pharmacology Toxicology and Pharmaceutics Phyllosphere Gene Bacteria Illumina dye sequencing |
| Zdroj: | F1000Research. 10:826 |
| ISSN: | 2046-1402 |
| DOI: | 10.12688/f1000research.54402.1 |
| Popis: | Background: Whole genome sequencing is become an essential tool to explore potential of microorganism and evolutionary study. The Serratia plymuthica UBCF_13 is one of phylloplane associated plant bacteria showing antifungal activity. For that reason, its complete genome information is necessary to enhance its potential as biocontrol against plant pathogenic fungal. Here, we report the genome sequence of Serratia plymuthica UBCF_13 to understand the molecular mechanism regarding its biocontrol ability. Methods: Continuous short reads were attained from Illumina sequencing runs and reads 150 bp were merged into a single dataset. Pan-genome based method was used to identify core-genome of S. plymuthica species and unique gene in UBCF_13. Results: Assambled Illumina reads of S. plymuthica strain UBCF_13 genome was produced a 5.46 Mb circular genome sequence. It was found 3321 genes belong to the core-genome sheared by the 18 strains evaluated. The UBCF_13 genome harbor 485 unique genes, where 300 of them only can be found in this strain Conclusions: The sequence of UBCF_13 genome sequence data will contribute for further exploration of the potential of S. plymuthica UBCF_13 as bacteria producing antibiotic. |
| Databáze: | OpenAIRE |
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