Computerized Comparison of the Protein Compositions of Erysipelothrix rhusiopathiae and Erysipelothrix tonsillarum Strains

Autor:	S. Bernáth, K. Tóth, G. Morovján, L. Német
Rok vydání:	2001
Předmět:	Gel electrophoresis Veterinary medicine food.ingredient biology Correlation coefficient Strain (chemistry) UPGMA General Medicine Erysipelothrix rhusiopathiae biology.organism_classification Erysipelothrix food Similarity (network science) Geometric mean
Zdroj:	Journal of Veterinary Medicine Series B. 48:73-79
ISSN:	1439-0450 0931-1793
DOI:	10.1046/j.1439-0450.2001.00414.x
Popis:	Protein profiles of six Erysipelothrix rhusiopathiae strains, five Erysipelothrix tonsillarum strains and three Erysipelothrix strains of uncertain taxonomic position were studied by sodium dodecyl sulphate-polyactylamide gel electrophoresis (SDS-PAGE). In a computerized comparison of the protein patterns of the strains, the level of similarity between the strains was determined. The SDS-PAGE protein bands were divided into 14 groups based on molecular weight. The relative distribution of proteins within these groups was used to characterize the strains. These distribution patterns were analysed by computing Pearson's correlation coefficient between strains, and by cluster analysis based on Euclidean distances and the unweighted pair-group method of arithmetic averages (UPGMA). The geometric mean of the similarities calculated by Pearson's correlation coefficient was 0.980 +/- 0.018 between the E. rhusiopathiae strains and 0.979 +/- 0.013 for E. tonsillarum strains. The value was 0.932 +/- 0.036 between the strains belonging to different species. However, a threshold value applicable for identification of a given strain to a species could not be established. Of the three strains of uncertain taxonomic position, the strains designated Rotzunge and Iszap 4 had a protein composition more similar to that of E. tonsillarum than to that of the E. rhusiopathiae type strain. The strain designated Pecs 56, which may be a member of a new species according to literature data, gave inconsistent results by the two methods used. The computerized evaluation method developed here is suitable for the comparison of the protein composition of the strains and for the construction of the protein similarity tree by cluster analysis.
Databáze:	OpenAIRE
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