An R version of FPTest for testing differences in allelic count
| Autor: | Yong-Bi Fu, Mo-Hua Yang |
|---|---|
| Rok vydání: | 2016 |
| Předmět: |
0106 biological sciences
0301 basic medicine Genetics Germplasm Genetic diversity Function (mathematics) Biology Random permutation 01 natural sciences 03 medical and health sciences 030104 developmental biology Genetic marker Sample size determination Statistics Allelic diversity Allele Ecology Evolution Behavior and Systematics 010606 plant biology & botany |
| Zdroj: | Conservation Genetics Resources. 9:313-318 |
| ISSN: | 1877-7260 1877-7252 |
| Popis: | Allelic count is an important measure of genetic diversity. However, it is a function of sample size and its estimation and interpretation can be biased. Previously, we introduced a random permutation method named FPTest to test the differences in allelic count among oat germplasm groups of variable sample size (Fu et al., Crop Sci 43:1989–1995, 2003) and published a SAS routine for it to facilitate its application (Fu, Mol Ecol Resour 10:398–392, 2010). Here we present an R version of FPTest called FPTestR. This R version considers six types of large marker data and generates four to five output files, making the test more accessible and useful in genetic diversity analysis. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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