Detection of Haplotypic Structure for Genome of Azerbaijani Buffalo Using High Density SNP Markers
| Autor: | M. Moradi Shahrbabak, S. Gholami, H. Moradi Shahrbabak, M. H. Fallahi, R. Abdollahi Arpanahi |
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| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
Genetics 0303 health sciences education.field_of_study Linkage disequilibrium Population size Haplotype Population Single-nucleotide polymorphism Biology 01 natural sciences 03 medical and health sciences Effective population size education Genotyping Genome size 030304 developmental biology 010606 plant biology & botany |
| Zdroj: | Russian Journal of Genetics. 55:1000-1007 |
| ISSN: | 1608-3369 1022-7954 |
| DOI: | 10.1134/s1022795419080040 |
| Popis: | The aim of this study was to determine genome-wide haplotype block structure, extent of linkage disequilibrium (LD) and effective population size using the information obtained from 243 Azerbaijani buffalo (Axiom® Buffalo Genotyping 90 K) using a high density SNP panel. After quality control, 62,141 SNP markers remained for population structure analysis and identification of haplotype blocks. The extent of LD was measured by the square of correlation coefficient (r2) between alleles. The maximum LD varied from 0.25 to 0.29 at a distance of |
| Databáze: | OpenAIRE |
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