Molecular Diversity Analysis of Pretty Interesting Potyviridae ORF (PIPO) Coding Region in Indian Isolates of Sugarcane streak mosaic virus

Autor:	Prabu Gajjeraman, Viswanathan Chandran
Rok vydání:	2015
Předmět:	0301 basic medicine Genetics food.ingredient biology Potyviridae Potyvirus biology.organism_classification Genome Sugarcane streak mosaic virus 03 medical and health sciences 030104 developmental biology food Cistron Diversity analysis Coding region Poacevirus Agronomy and Crop Science
Zdroj:	Sugar Tech. 18:214-221
ISSN:	0974-0740 0972-1525
Popis:	Sugarcane streak mosaic virus (SCSMV) is a distinct member of Poacevirus in Potyviridae family causing mosaic disease in sugarcane. In this study, we computationally predicted potyvirus specific overlapping ORF, PIPO (~139 amino acid) in P3 cistron of known SCSMV genome in +1 reading frame using MLOGD. The nucleotide variations in P3 and the predicted PIPO were experimentally validated using SCSMV isolates from India. Phylogenetic relatedness of identified sequences (P3, PIPO) reflects strong selection and at least three subpopulations within the strains of SCSMV in India. These finding considerably broaden future investigation of the SCSMV pathogenesis in sugarcane.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_________::5a7ee12de2cff43f3d3f4cf4ae88caf4 https://doi.org/10.1007/s12355-015-0376-z Zobrazit plný text záznamu Full text from SpringerLink