Annotations for Rule-Based Models
| Autor: | William Waites, Matteo Cavaliere, Vincent Danos, Ricardo Honorato-Zimmer |
|---|---|
| Rok vydání: | 2019 |
| Předmět: |
0303 health sciences
Syntax (programming languages) Computer science business.industry 030302 biochemistry & molecular biology Rule-based system computer.file_format Ontology (information science) computer.software_genre 03 medical and health sciences Annotation Ontology SPARQL Artificial intelligence RDF business GeneralLiterature_REFERENCE(e.g. dictionaries encyclopedias glossaries) computer Natural language processing 030304 developmental biology |
| Zdroj: | Modeling Biomolecular Site Dynamics ISBN: 9781493991006 |
| DOI: | 10.1007/978-1-4939-9102-0_13 |
| Popis: | The chapter reviews the syntax to store machine-readable annotations and describes the mapping between rule-based modelling entities (e.g., agents and rules) and these annotations. In particular, we review an annotation framework and the associated guidelines for annotating rule-based models, encoded in the commonly used Kappa and BioNetGen languages, and present prototypes that can be used to extract and query the annotations. An ontology is used to annotate models and facilitate their description. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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