CSSP(Consensus Secondary Structure Prediction): a web-based server for structural biologists
| Autor: | Ankit Gupta, Janardhan Kumar Amburi, Avnish Deshpande, Radhakrishnan Sabarinathan, Ramaswamy Senthilkumar, Kanagaraj Sekar |
|---|---|
| Rok vydání: | 2009 |
| Předmět: |
Structure (mathematical logic)
Sequence Web server Information retrieval business.industry Computer science computer.software_genre General Biochemistry Genetics and Molecular Biology Plot (graphics) Supercomputer Education Research Centre Web application Helical wheel business computer Protein secondary structure |
| Zdroj: | Journal of Applied Crystallography. 42:336-338 |
| ISSN: | 0021-8898 |
| DOI: | 10.1107/s0021889808043847 |
| Popis: | Sequence–structure correlation studies are important in deciphering the relationships between various structural aspects, which may shed light on the protein-folding problem. The first step of this process is the prediction of secondary structure for a protein sequence of unknown three-dimensional structure. To this end, a web server has been created to predict the consensus secondary structure using well known algorithms from the literature. Furthermore, the server allows users to see the occurrence of predicted secondary structural elements in other structure and sequence databases and to visualize predicted helices as a helical wheel plot. The web server is accessible at http://bioserver1.physics.iisc.ernet.in/cssp/. |
| Databáze: | OpenAIRE |
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