P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment
| Autor: | Sean E. Matson, Will Eichert, Mark D. Camara, Michael A. Banks |
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| Rok vydání: | 2016 |
| Předmět: |
0106 biological sciences
0301 basic medicine Linkage (software) Genetics Computational biology Mating design Biology 010603 evolutionary biology 01 natural sciences Null allele Set (abstract data type) 03 medical and health sciences 030104 developmental biology Genotype Microsatellite Allele Genotyping Ecology Evolution Behavior and Systematics Biotechnology |
| Zdroj: | Molecular Ecology Resources. 16:599-599 |
| ISSN: | 1755-098X |
| DOI: | 10.1111/1755-0998.12393 |
| Popis: | Determining how many and which codominant marker loci are required for accurate parentage assignment is not straightforward because levels of marker polymorphism, linkage, allelic distributions among potential parents and other factors produce differences in the discriminatory power of individual markers and sets of markers. p-loci software identifies the most efficient set of codominant markers for assigning parentage at a user-defined level of success, using either simulated or actual offspring genotypes of known parentage. Simulations can incorporate linkage among markers, mating design and frequencies of null alleles and/or genotyping errors. p-loci is available for windows systems at http://marineresearch.oregonstate.edu/genetics/ploci.htm. |
| Databáze: | OpenAIRE |
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