Molecular and vibrational structure of the extracellular bacterial signal compound N-butyryl-homoserine lactone (C4-HSL)

Autor: Jimmy Bak, Jens Spanget-Larsen
Rok vydání: 2009
Předmět:
Zdroj: Vibrational Spectroscopy. 49:237-241
ISSN: 0924-2031
DOI: 10.1016/j.vibspec.2008.09.003
Popis: The molecular and vibrational structure of the title compound (C4-HSL) was studied by experimental and theoretical methods. The infrared (IR) absorption spectrum was measured in the solid state and in CCl 4 suspension. The observed absorption bands were compared with transitions obtained with B3LYP/cc-pVTZ density functional theory (DFT) calculations. Two stable molecular conformations were predicted, corresponding to an endo - and an exo -conformer with similar energies. Intermolecular amide–amide hydrogen bonding in the crystal state was approximated by a simple cluster model, leading to excellent agreement with the observed solid state IR spectrum. Due to the low solubility of C4-HSL in common solvents for IR spectroscopy, such as CS 2 and CCl 4 , a liquid solution spectrum of pure, monomeric C4-HSL was not obtained. However, absorbance peaks observed in oversaturated CCl 4 solution could be assigned to distinct contributions from suspended micro-crystalline aggregates and dissolved monomeric species. The key vibrational bands of the monomeric form of C4-HSL are reported here for the first time: 3425 cm −1 [ν(N–H)], 1784 cm −1 [ν(C O), lactone], 1688 cm −1 [amide I], and 1494 cm −1 [amide II] (CCl 4 ).
Databáze: OpenAIRE