| Autor: |
Hoehenwarter, Wolfgang, Mönchgesang, Susann, Neumann, Steffen, Majovsky, Petra, Abel, Steffen, Müller, Jens |
| Rok vydání: |
2016 |
| DOI: |
10.6084/m9.figshare.c.3596231_d17.v1 |
| Popis: |
Correlation and GO term analysis. (A) Heat map of a hierarchical cluster analysis of the group of 48 transcripts altered in all three genotypes upon Pi-depletion. Relative expression values are shown. (B) Scatter plots presenting pairwise correlation analysis (log2 fold changes) of the 48 commonly regulated genes upon Pi-depletion. FC, fold change. (see also Additional file 1: Table S1). (C) Correlation analysis of a subset of 241 Pi-responsive genes that were differentially regulated in wild-type and pdr2 but not in lpr1lpr2 roots (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). The upper image shows log2 fold changes of all genes upon Pi-starvation. The lower heat map illustrates the same gene set and expressional changes using a color code. (D) GO term analysis of a subset of 1680 genes that were either Pi-responsive in wild-type, pdr2 and/or lpr1lpr2 roots or that were differentially regulated in Pi-replete pdr2 and/or lpr1lpr2 roots (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). Each segment in a wheel represent one GO term. The top five GO terms are listed and significance values are shown. The complete list of genes and GO terms is shown in Additional file 4: Table S3. (see also Additional file 4: Table S3, Additional file 5: Table S4, Additional file 6: Table S5, Additional file 7: Table S6). (PDF 246 kb) |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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