Deciphering the genome structure and paleohistory of Theobroma cacao

Autor: Julie Poulain, W. Richard McCombie, Jose Fernandes Barbosa-Neto, Diógenes Infante, Michel Boccara, Stephanie Sidibe-Bocs, Christopher Viot, Bertrand Pitollat, Melissa Kramer, Jean-Marc Aury, Michael J. Axtell, Jetty S.S. Ammiraju, Emmanuel Guiderdoni, Xavier Sabau, Zi Sh, Didier Clément, Erika Sallet, Patrick Wincker, Stephan C. Schuster, Gaëtan Droc, Thomas Schiex, Ismael S. Kébé, Joseph Moroh Akaza, Mark J. Guiltinan, Yolande Roguet, Michael Abrouk, Maguy Rodier-Goud, Cristian Chaparro, Anne Dievart, Mathilde Allègre, Mickael Bourge, Zhaorong Ma, Jérôme Salse, Rod A. Wing, Karina Peres Gramacho, Yufan Zhang, Siela N. Maximova, Francis Quetier, Valentin Guignon, Angélique D'Hont, Spencer Brown, Ange-Marie Risterucci, François Sabot, John Carlson, Jérôme Gouzy, Dave Kudrna, Dominique Brunel, Aurélie Bérard, Olivier Fouet, Xavier Argout, Wolfgang Golser, Thierry Legavre, Ronan Rivalan, Mathias Tahi, Laura Gelley, Florent Murat, Pierre Costet, Claire Lanaud, Manuel Ruiz, Olivier Panaud, Xiang Song
Rok vydání: 2010
Předmět:
Zdroj: Nature Precedings.
ISSN: 1756-0357
DOI: 10.1038/npre.2010.4908.1
Popis: We sequenced and assembled the genome of Theobroma cacao, an economically important tropical fruit tree crop that is the source of chocolate. The assembly corresponds to 76% of the estimated genome size and contains almost all previously described genes, with 82% of them anchored on the 10 T. cacao chromosomes. Analysis of this sequence information highlighted specific expansion of some gene families during evolution, for example flavonoid-related genes. It also provides a major source of candidate genes for T. cacao disease resistance and quality improvement. Based on the inferred paleohistory of the T. cacao genome, we propose an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions. The T. cacao genome can be considered as a simple living relic of higher plant evolution.
Databáze: OpenAIRE