The IWGSC Reference genome browser, data mining and beyond
| Autor: | Alaux, Michael, Letellier, Thomas, Alfama Depauw, Françoise, Rogers, Jane, Choulet, Frédéric, GUERCHE, Claire, LOAEC, Mikaël, Flores, Raphaël, Michotey, Célia, Adam-Blondon, Anne-Francoise, Paux, Etienne, Eversole, Kellye, Quesneville, Hadi |
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| Přispěvatelé: | Unité de Recherche Génomique Info (URGI), Institut National de la Recherche Agronomique (INRA), International Wheat Genome Sequencing Consortium (IWGSC), Génétique Diversité et Ecophysiologie des Céréales (GDEC), Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), Eversole Associates |
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: | |
| Zdroj: | PAG XXV-Plant and Animal Genome Conference PAG XXV-Plant and Animal Genome Conference, Jan 2017, San Diego, United States |
| Popis: | International audience; URGI is a genomics and bioinformatics research unit at INRA (French National institute for Agricultural Research), dedicated to plants and crop parasites. We develop and maintain a genomic and genetic Information System called GnpIS that manages multiple types of wheat data. Under the umbrella of the IWGSC (International Wheat Genome Sequencing Consortium), we have set up a Sequence Repository on the Wheat@URGI website to store, browse and query the data being generated by the consortium: http://wheat-urgi.versailles.inra.fr/Seq-Repository. The repository holds the wheat physical maps and sequences, especially the gold standard IWGSC reference sequence of all the pseudomolecules. We set-up dedicated tools: a genome browser to display the reference sequence and his incoming annotations. a BLAST server to query the sequence and provide links to browsers. a InterMine datawarehouse to integrate the genomics data with genetics and phenomics data to go beyond. |
| Databáze: | OpenAIRE |
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