Literature Mapping with PubAtlas - extending PubMed with a 'BLASTing interface'
| Autor: | Parker, D. S., Chu, W. W., Sabb, F. W., Toga, A. W., Robert Bilder |
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| Jazyk: | angličtina |
| Rok vydání: | 2009 |
| Zdroj: | Parker, DS; Chu, WW; Sabb, FW; Toga, AW; & Bilder, RM. (2009). Literature Mapping with PubAtlas-extending PubMed with a 'BLASTing interface'.. Summit on translational bioinformatics, 2009, 90-94. UCLA: Retrieved from: http://www.escholarship.org/uc/item/5zs9p3zb ResearcherID |
| Popis: | PubAtlas (www.pubatlas.org) is a web service and standalone program providing literature maps for the biomedical research literature. It accepts user-defined sets of terms (PubMed queries) as input, and permits 'BLASTing' of one set against another: for all terms x and y in these sets, deriving the results of the pairwise intersections x AND y. This all vs. all capability extends PubMed with a literature analysis interface. Correspondingly, the basic form of literature map that PubAtlas provides for exploring associations among sets of terms is an interactive tabular display, in heatmap/microarray format.PubAtlas supports development of specialized lexica -- hierarchies of controlled terminology that can represent sets of related concepts or a 'user-defined query language'. PubAtlas also provides historical perspectives on the literature, with temporal query features that highlight historical patterns. Generally, it is a framework for extending the PubMed interface, and an extensible platform for producing interactive literature maps. |
| Databáze: | OpenAIRE |
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