Mapping atypical UV photoproducts in vitroand across the S. cerevisiaegenome

Autor: Bohm, Kaitlynne A., Sivapragasam, Smitha, Wyrick, John J.
Zdroj: STAR Protocols; March 2022, Vol. 3 Issue: 1
Abstrakt: Exposure to ultraviolet (UV) light induces DNA damage, predominantly cyclobutane pyrimidine dimers (CPD) and 6,4-photoproducts (6,4-PP), as well as rare, atypical photoproducts at thymidine-adenine (TA) sequences. We have recently shown ‘TA’ photoproducts are induced in UV-irradiated oligonucleotides and across the budding yeast genome. Here, we describe a protocol for mapping atypical ‘TA’ photoproducts in vitroand in vivo.This protocol overcomes the technical challenges involved in accurately mapping such rare photoproducts by using ultraviolet damage endonuclease (UVDE) enzymes.
Databáze: Supplemental Index